BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1569.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094933|ref|YP_001100008.1| putative signal peptide [Hermin...   317   4e-88

>gi|134094933|ref|YP_001100008.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  317 bits (811), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 187/222 (84%), Gaps = 2/222 (0%)

Query: 14  ATSLLLACCGAF--AFSLSDLSNQDATAGLKAALEKGASTAVANLGRPNGFLANDKVKIQ 71
           A ++ L C  +   A SL+DLSN+DA++G+KAALEKGAS AV+ LG  NGFL N+KVKI 
Sbjct: 10  AATVALICASSLVGAVSLADLSNKDASSGVKAALEKGASVAVSKLGVENGFLNNEKVKIG 69

Query: 72  LPGALEQAMPILRMTGMGGQVDGLVADMNHAAEAAVPLAKPLLVNAVKSMSVADAKNILS 131
           LP  LE+AMPILRMTG G +VD L   MNHAAE+AV LAKPLL++AVKSMSV DAKNIL+
Sbjct: 70  LPSVLEKAMPILRMTGQGKKVDELTVSMNHAAESAVALAKPLLLDAVKSMSVTDAKNILT 129

Query: 132 GGDTSVTDFFRQKTSGELAVKFLPIVKQITDKNGLSSRYNAVMGQVAKSGLVSAEQSTVE 191
           GGDT+VTDFFRQKT+  L  +FLP+VK+ITDKNGLS++YNAVMG+   SGLVS E++TVE
Sbjct: 130 GGDTAVTDFFRQKTATPLNAQFLPVVKKITDKNGLSAQYNAVMGKAGSSGLVSKEETTVE 189

Query: 192 GYVTQRALDGLFLMIGEEEKAIRKDPVGSGSAIIGKVFGALR 233
           GYVT+RALDGL++MI EEEKAIR DPVGSGSAI+GKVFGAL+
Sbjct: 190 GYVTKRALDGLYMMIAEEEKAIRADPVGSGSAILGKVFGALK 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 414,048
Number of extensions: 16163
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)