BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1565.p
         (452 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187 [...   236   1e-63
gi|134093655|ref|YP_001098730.1| integral membrane protein [Herm...    86   3e-18

>gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187
           [Herminiimonas arsenicoxydans]
          Length = 426

 Score =  236 bits (602), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 231/428 (53%), Gaps = 12/428 (2%)

Query: 26  AEISIAASRKIRLEMMSKEGEANADRVLSLQAQPGNFFTVVQIGLNAVAILGGVVGEPAL 85
           +EI+I  S++IRL+ +++ G   A   L L   P  F + +Q+G+  + I  G  GE +L
Sbjct: 2   SEIAIVTSKRIRLQKLAENGSRGAKAALDLSESPSRFLSTIQVGITLIGIFNGAFGEASL 61

Query: 86  TPHMREIISTFYTGPLLE--NASFAMSFLVVTAFF--ILFADLMPKRLAMAAPERAAVVL 141
              +   I+     P+L       A+  +VV   F  ++  +L+PKR+AM  PE  A V+
Sbjct: 62  VERLTPEIALI---PVLSMYAREIALGIVVVGITFGSLILGELVPKRIAMQYPEVVASVV 118

Query: 142 VKPMLLLETLFKPLVWFFNSLSKWIFTLFGLPQVRQDVITPSEIHAMVDAGAQAGVLLTQ 201
             PML L  L  P V      +++I  + G+   + D +T  EI  ++  G  AG+    
Sbjct: 119 AAPMLWLSRLMGPFVKILTGTTEFILRILGMHHKKDDAVTEEEIAGLIREGTDAGLFEKT 178

Query: 202 EHHLIENVFELESRYVPSAMTPRDSIVYFLLTDSEETIRLKIIDHPHSRFLVCDGHIDAV 261
           EH ++     L+ + V + MTPR  + +  L D+ ET   KI D  ++RF VC G+I  +
Sbjct: 179 EHDIVSRALRLDDQRVAALMTPRLDVHFIDLEDTIETNLAKIADSSYNRFPVCRGNISHI 238

Query: 262 LGYIDSKDVLKRLLKGEQFSLAD-KGLVHPPLSIPDSLNLWEVLERMKAMDEDLAIVVNE 320
           +G + +  + +++++G+  +  D +G   PPL +P++++  ++LE +K    +LA+V++E
Sbjct: 239 IGIVHAGSLFEQMIRGKTITSLDIEGATRPPLFVPETISAMQLLETLKKNRAELALVIDE 298

Query: 321 YALVVGIISITDVTGVLMGNLLAITE-EEQQIVKRDANSWLMDGLTPLNDVMSELEIE-E 378
           Y  + GI++++DV G L+G++  I E  E   V+RD  SWL+DG    +     LE +  
Sbjct: 299 YGEIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRDDGSWLIDGGVSFDRFRELLETDVR 358

Query: 379 YPNPVG--YETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRINQLLVTRFKQDKS 436
           +P      Y TL+GF+M  L  IP+ +D   +  ++ EVVD++ NRI++LL+T+      
Sbjct: 359 FPEEASGTYHTLAGFVMTFLGHIPQMSDSFEWEGYRIEVVDMDRNRIDRLLITKIDPPPE 418

Query: 437 EKSEKSEQ 444
           E +   E 
Sbjct: 419 ENASGEES 426


>gi|134093655|ref|YP_001098730.1| integral membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score = 85.9 bits (211), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 205 LIENVFELESRYVPSAMTPRDSIVYFLLTDSEETIRLKIIDHPHSRFLVCDGHIDAVLGY 264
           +IE VF++        M PR  +    +T         +++  HSRF   +G  D V+G 
Sbjct: 57  MIEGVFQVSELSARDIMVPRSQMDVIDITKPIAEWLPMVLETAHSRFPAIEGERDQVVGI 116

Query: 265 IDSKDVLKRLLKGEQFSLADKGLVHPPLSIPDSLNLWEVLERMKAMDEDLAIVVNEYALV 324
           + +KD+L R   G  F +  + ++ P + IP+S  L  +L   +A    +AIVV+EY  V
Sbjct: 117 LMAKDLL-RYYAGASFDV--RQMLRPAVFIPESKRLNVLLSDFRAKHNHMAIVVDEYGGV 173

Query: 325 VGIISITDVTGVLMGNL---LAITEEEQQIVKRDANS----WLMDGLTPLNDVMSELEIE 377
            G+I+I DV   ++G++       EE+  I+   A      W +  LT L  V  EL   
Sbjct: 174 AGLITIEDVLEQIVGDIEDEYDFDEEQDNILAIKAGEYGPRWRIKALTELTQVNEELGTA 233

Query: 378 EYPNPVGYETLSGFIMYMLRKIPKKTDFVLFSDFKFEVVDIEGNRINQLLVTRF 431
                V  +TL GFI   L ++P K + +   + +FE++  +  +I+ LLV + 
Sbjct: 234 LTSQDV--DTLGGFITNHLARMPHKGEVIDIDNLRFEILRADARQIHVLLVEKL 285


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 761,269
Number of extensions: 31276
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 367
Effective length of database: 720,272
Effective search space: 264339824
Effective search space used: 264339824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)