BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1564.p
         (335 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096544|ref|YP_001101619.1| putative thiamine biosynthesis ...   320   7e-89

>gi|134096544|ref|YP_001101619.1| putative thiamine biosynthesis
           protein ApbE [Herminiimonas arsenicoxydans]
          Length = 344

 Score =  320 bits (819), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 173/344 (50%), Positives = 223/344 (64%), Gaps = 16/344 (4%)

Query: 4   RVLIPVELQAPPLPPS-GVLAQRFAGHTMGTTWSVQALAPREVAAHTIASAIDAQLQRVI 62
           R L+PV +  PPLPP+ G +     G TMGT+WSV+  A        +   I  QL  VI
Sbjct: 3   RTLVPV-IDTPPLPPALGSVVHTLQGKTMGTSWSVKLAADAARRLLPLQELIQHQLDTVI 61

Query: 63  EEMSTWQPDSHISRFNRAPAGSWHALPEAFFTVLDAALTMAVDSDGAFDPTVGPLVDLWG 122
            +MSTW+ DS +SR+N+A AGSWH LP+ FF VL+ AL +A  SDGA+DPT G LV+ WG
Sbjct: 62  AQMSTWETDSDLSRYNQAAAGSWHRLPDEFFRVLEYALDVAQASDGAYDPTAGALVNAWG 121

Query: 123 FGPGSDQRRLPH---LPDPRSLQAARLRCGWQRIVLDRTGRRVQQAGGVHLDFSGIAKGY 179
           FGP   QR       +P   +L  AR +CGWQRI LD+   RV Q G   +D S IAKG+
Sbjct: 122 FGP--TQRYTEEGFVVPGNTALDFARAQCGWQRIQLDKAAHRVLQPGNATIDLSAIAKGF 179

Query: 180 AVDLIAQALRACGCVSWLVEVGGELSGCGVKADGQPYWVALERP---------PQDAGPG 230
           +VD IA+AL   G  S+LVEVGGEL G GVK DGQP+WVALE P           +A   
Sbjct: 180 SVDQIARALLQRGIDSFLVEVGGELRGAGVKPDGQPWWVALEHPLPASFADAITNEASIA 239

Query: 231 MVVALHDLAIATSGDYRRYVDHAGQRYAHTIDPRTGTPVRNVLASVTVLHRQCMVADALA 290
            + AL++L++ATSGDYRRY +    R++HTIDPR+G P+ + LASVTVLH  CM ADA +
Sbjct: 240 TIAALYNLSVATSGDYRRYFEEGDTRFSHTIDPRSGEPIAHGLASVTVLHCDCMAADAWS 299

Query: 291 TVLTVLGEEDGMSFAQQRGIAALFIRRQGQGYQETMTPAFAAML 334
           T L V+G   G++FA Q  +AALFI+R  +G++E M+ A AA+L
Sbjct: 300 TALGVMGAAQGLAFADQHDLAALFIQRGKEGFEEHMSQAMAALL 343


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 716,202
Number of extensions: 31269
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 253
Effective length of database: 730,157
Effective search space: 184729721
Effective search space used: 184729721
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)