BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1563.p
         (276 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096543|ref|YP_001101618.1| putative signal peptide [Hermin...   343   7e-96

>gi|134096543|ref|YP_001101618.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 285

 Score =  343 bits (879), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 168/276 (60%), Positives = 209/276 (75%), Gaps = 14/276 (5%)

Query: 14  KIAALA--LAMTLPLSAHAHRQWLLPSATVLSGNDAWVTVDAAVSNDLFYFEHFPLRLDG 71
           ++AALA  L++ LP+SAHAHR W+LPSATVLSGN+ WVTVDAAVSNDLFYFEH PLRLD 
Sbjct: 8   RVAALAVSLSVALPMSAHAHRSWMLPSATVLSGNEPWVTVDAAVSNDLFYFEHNPLRLDN 67

Query: 72  LVVTGPEGKPVPAVNAATGKYRSTFDVQLNQSGTYKIAVVNNAVFASYKLDGQQKRWRGN 131
           L V  P+GK V A N +TGKYRSTFDV+L Q GTYK+ +VN+ + ASYK+  + KRWRG 
Sbjct: 68  LAVIAPDGKTVEAENKSTGKYRSTFDVKLTQKGTYKLTMVNDGLSASYKVGTENKRWRGT 127

Query: 132 ADNLAKEIPANATELKVTQMNSRVETFVTAGKPSRSALAVTGTGLELQPITHPNDLVAGD 191
           A++ AK+IPA+A ++ V++M SR+E FV++GKP+ + L  TG GLEL PITHPNDL AGD
Sbjct: 128 AESFAKDIPADAKDVSVSRMQSRMEVFVSSGKPNDTVLKPTGAGLELVPITHPNDLFAGD 187

Query: 192 TASFQLLLDGKPAADVEVELVPGGIRYRDKLLDTKLKTDADGKFSVKWTGPGMYWLEASV 251
           T++F+ +LDGKPAAD+EV L+PGGIRYRD+L + K+KTD DGKFSVKW   GMYW+ AS 
Sbjct: 188 TSNFRFMLDGKPAADIEVTLIPGGIRYRDQLGEIKVKTDKDGKFSVKWPTAGMYWMSASN 247

Query: 252 ADQK------TTLPQATQ------RRASYIATVEVL 275
              +         PQA        RR SY AT+EVL
Sbjct: 248 GGARMEGGAANAAPQAVGTIAKPIRRVSYSATLEVL 283


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 544,303
Number of extensions: 23164
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 196
Effective length of database: 736,747
Effective search space: 144402412
Effective search space used: 144402412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)