BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1562.p
         (181 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096542|ref|YP_001101617.1| putative signal peptide [Hermin...   234   2e-63

>gi|134096542|ref|YP_001101617.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 170

 Score =  234 bits (596), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 131/159 (82%)

Query: 23  ASAAPAGAAEMNLKIEIPTLNVAEYHRPYLAAWIERADQSVAANLAVWYDMKKKDKEGEK 82
           A  AP+ AA+MN+K+EIP L VAEYH+PY+A WIE ADQ+   NLAVWYD+K K+ EG K
Sbjct: 12  ALTAPSFAADMNVKVEIPRLTVAEYHKPYVAFWIEGADQTFVRNLAVWYDLKMKNNEGTK 71

Query: 83  WLKDMRQWWRRSGREQQMPIDGVSGATRAPGEQKLNFGSTKGAIANLAPGDYVLMVEAAR 142
           WLKDMRQWWR+SGR+ QMP+DG+SGATRAPGEQ+LNF + K  +  L  G+Y L+VEAAR
Sbjct: 72  WLKDMRQWWRKSGRDLQMPVDGLSGATRAPGEQQLNFNAAKSGLDKLPAGEYALVVEAAR 131

Query: 143 EVGGRELVKLPFQWPPKSPQSAKAQGNSELGAVALELKP 181
           EVGGREL+++PFQWPPKS Q+A+A+G  ELGAV L LKP
Sbjct: 132 EVGGRELIRVPFQWPPKSAQTAQAKGEHELGAVTLTLKP 170


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 267,939
Number of extensions: 8706
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 105
Effective length of database: 749,927
Effective search space: 78742335
Effective search space used: 78742335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)