BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1561.p
         (222 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096541|ref|YP_001101616.1| hypothetical protein HEAR3394 [...   270   3e-74

>gi|134096541|ref|YP_001101616.1| hypothetical protein HEAR3394
           [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 153/206 (74%), Gaps = 2/206 (0%)

Query: 17  RRAFWLKHLHQWHWISSAICLIAMLAFAATGLTLNHAAQIEAKPQVMHRNATLPLALLAP 76
           +RA+WLK LHQWHWISSA+CL+ ML F+ TG+TLNH++QIEAKPQV  R A LP AL   
Sbjct: 9   QRAYWLKTLHQWHWISSALCLLGMLLFSVTGITLNHSSQIEAKPQVAMREAQLPAALQMQ 68

Query: 77  LRQQAEAADAKGGSKAALPQGVRDWISRELSVTVGQHSAEWSTDEVYVALPRPGGDAWLR 136
           L       +  G  KA LPQ ++ W+   +S+ V     EWS +EVY+ALPRPGGDAW+R
Sbjct: 69  LANMN--TEESGKDKAPLPQELQRWMKDSMSLDVSGRDVEWSPEEVYIALPRPGGDAWVR 126

Query: 137 VALQDGQVEYEKTDRGWISYFNDLHKGRNTGVAWSWFIDVFAVACLVFCLTGLFLLQMHA 196
           +    G +E E T+RGWISY NDLHKGRNTG AWSWFID+FA ACLVF +TGLF+L+MHA
Sbjct: 127 IDRTSGAIESESTNRGWISYLNDLHKGRNTGDAWSWFIDIFAAACLVFSITGLFILKMHA 186

Query: 197 GKRPATWPMVGLGLVAPLLLALLLIH 222
             RP TWP+VGLG++ P LLA+L IH
Sbjct: 187 TNRPGTWPIVGLGVLIPFLLAILFIH 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 409,603
Number of extensions: 15630
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 144
Effective length of database: 743,337
Effective search space: 107040528
Effective search space used: 107040528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)