BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1559.p (480 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 442 e-125 gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 139 4e-34 gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 138 5e-34 gi|134093921|ref|YP_001098996.1| MocR family transcriptional reg... 84 1e-17 gi|161485636|ref|YP_001100411.2| aminotransferase AlaT [Herminii... 68 1e-12 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 442 bits (1136), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/472 (48%), Positives = 308/472 (65%), Gaps = 5/472 (1%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 LY+ A +A SI++GVLR G+R+ SVR AS VS +TV +AY LLE+RG+I ++ +S Sbjct: 3 LYETLAADIALSIQEGVLRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLIRARERS 62 Query: 66 GYFVRQQAETIARPTASPPVQADHPAWQQSTEVDVSRLVLATLKTIQQDGTVPLGSPYPN 125 GY+V R P QA P + S+ VD+S LV L++ + VPLGS +P+ Sbjct: 63 GYYVVGDV----RKLPPEPEQASQPD-EDSSPVDISELVFEVLESSKMRDVVPLGSAFPS 117 Query: 126 PALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPAEIVVTV 185 P LFP RLA+ + S DDL PG+P+L RQIA RY +GL V P EIV+T Sbjct: 118 PLLFPLARLAKAMASSVQQLDPWSTVDDLTPGNPQLRRQIALRYRADGLHVQPDEIVITN 177 Query: 186 GATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRGIDVAALEER 245 GA +A+NLCL AV RPGD + VE+PTFYA L ++ER G++A+E+PT PR G+D+AAL Sbjct: 178 GALDALNLCLIAVTRPGDAVLVESPTFYAALQSLERNGLQAIEVPTHPREGMDLAALARV 237 Query: 246 LQTQAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSELYYGNAHPSS 305 L+ AC +M NFQNPLG MPD +K LV L +QH +P+IE+ VY ELY+G+ P+ Sbjct: 238 LERHQPKACWLMTNFQNPLGSLMPDEKKRDLVALLSQHDIPLIEDDVYGELYFGDKRPAP 297 Query: 306 LKNYDRDGLVLHCSSFSKSLTSAHRIGWAMPGRYRAQVEKLKFLNTLATPTAPQRAIAEY 365 K YD GLV+HCSSFSK L +R+GWA PGRY V + K TLA Q A+A Y Sbjct: 298 AKAYDTKGLVMHCSSFSKCLAPGYRVGWAAPGRYTRAVARHKLTTTLAASAPAQAALATY 357 Query: 366 LTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPEGGYVLWVELPPQVDAMEL 425 L +GGY+RHLR++R A Q+ + R+FP GTQ + P GGY LWVELP V+A+ L Sbjct: 358 LEKGGYDRHLRQLRHTLALQQTQFMEAIARYFPPGTQATRPRGGYFLWVELPHAVNALTL 417 Query: 426 YRRSLALGITVAPGRIFAATNRYSHFIRLNYSYTWSKETEQALKLVGKLVEE 477 +R++L+ GI++APG IF+A +++ IRLNY + W TE AL +G+LV+ Sbjct: 418 HRQALSHGISIAPGPIFSAHQGFTNCIRLNYGHAWDARTEAALATLGQLVQN 469 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 127/460 (27%), Positives = 214/460 (46%), Gaps = 30/460 (6%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 L Q + A I D +LR G R+ S+R S QHKVS TVV AY+ L + G++ES+ S Sbjct: 31 LIAQIVQLVTARIDDKLLRTGARMPSIRQFSDQHKVSRFTVVEAYDRLVAGGLLESRRGS 90 Query: 66 GYFVRQQAETIARPTASPPVQADHPAWQQSTEVDVSRLVLATLKTIQQDGTVPLGSPYPN 125 G++VR + P +P Q + A Q VDV LV + + P Sbjct: 91 GFYVRDRT-----PMLAPRAQRTNTARQ---PVDVVWLVRNMFRQLPP-------QKMPG 135 Query: 126 PALFPSHRL-AQYAGRIARHASQSSVFDDLPPGHPE----LLRQIARRYLENGLKVDPAE 180 L P+ L A R S+ ++ L G+P+ L +Q+ + E + P + Sbjct: 136 VGLLPNEWLDADLVANALRAVSRQNL--PLQYGNPQGFLPLRQQLQLKLAELEISATPDQ 193 Query: 181 IVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRGIDVA 240 V T+G T+A++L + +PGDTI V+ P ++ M + LG + + IP P G D+A Sbjct: 194 FVTTLGVTQALDLVARHYIQPGDTIFVDDPAWFLMFGSFAMLGAKVVGIPRLP-DGPDIA 252 Query: 241 ALEERLQTQAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSELYYGN 300 L E ++ NP + ++ +++++A Q+ I+E+ +Y +++ G Sbjct: 253 QLAELAALHRPKLFVINSVLHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGT 312 Query: 301 A-HPSS-LKNYDRDGLVLHCSSFSKSLTSAHRIGW-AMPGRYRAQVEKLKFLNTLATPTA 357 P++ + D+ V++ FSK+L + R+G+ A + K L TL T Sbjct: 313 TVQPATRIAALDQLNRVIYLGGFSKTLAANLRVGFIATSPEIAKHLCDRKMLTTLTTTEI 372 Query: 358 PQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPEGGYVLWVELP 417 +R + L++G Y +H R+R RD + R +S P G +V W ++ Sbjct: 373 TERVVYRILSEGHYRKHADRLRNKLDAVRDKTVRQMER-IGIKINISTPAGMFV-WTDV- 429 Query: 418 PQVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYS 457 D+ L R++ G +APG +F+ S +R N + Sbjct: 430 -GCDSNALTERAMEQGYLLAPGSLFSPNQLPSTNMRFNVA 468 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 138 bits (348), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 107/396 (27%), Positives = 176/396 (44%), Gaps = 25/396 (6%) Query: 92 WQ--QSTEVDVSRLVLATLKTIQQDGTVPLGSPYPNPALFP-SHRLAQY------AGRIA 142 WQ Q E S ++ LK + + P+P FP H A + G+IA Sbjct: 11 WQFAQRAEQLQSSVIREILKITMRPDIISFAGGLPSPETFPVEHMKAAFDTVLSQQGKIA 70 Query: 143 RHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPAEIVVTVGATEAINLCLQAVARPG 202 S G+ L IA G+ + P ++++ G+ +A++L + + Sbjct: 71 LQYGPSD-------GYAPLREWIADSLSIPGVTITPDQVLMVSGSQQALDLLGKVLIEEH 123 Query: 203 DTIAVETPTFYAMLHAIERLGMRALEIPTDPRRGIDVAALEERLQTQAVAACMV--MPNF 260 + VETP++ L A + IPTD D L E + A A ++ +PNF Sbjct: 124 SKVLVETPSYLGALQAFSVYQPEFVSIPTD-----DFGLLPEEVAKIADGARLLYALPNF 178 Query: 261 QNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSELYYGNAHPSSLKNYDRDGLVLHCSS 320 QNP G M + LV A+ +P+IE+ Y L Y + + +G V++ S Sbjct: 179 QNPTGRTMSVERRFALVETCARLGLPLIEDDPYGALSYRGEPLPKMLTMNPNG-VIYLGS 237 Query: 321 FSKSLTSAHRIGWAM-PGRYRAQVEKLKFLNTLATPTAPQRAIAEYLTQGGYERHLRRVR 379 FSK LT R+G+ + P ++E+ K L T Q + E + G E+H+ +R Sbjct: 238 FSKVLTPGIRLGYVVAPVPLVRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLEKHIPSIR 297 Query: 380 RAFAQQRDMMRHFVLRFFPAGTQVSEPEGGYVLWVELPPQVDAMELYRRSLALGITVAPG 439 +A Q +M + FFPAG ++PEGG +WV LP +D M+L S+ + PG Sbjct: 298 TLYANQCQVMLDALTEFFPAGVTWNKPEGGMFIWVTLPEHIDCMKLLEESITQNVAFVPG 357 Query: 440 RIFAATNRYSHFIRLNYSYTWSKETEQALKLVGKLV 475 F A + +RL++ ++ + + + KL+ Sbjct: 358 APFYANEPQKNTLRLSFVTVPPEKIREGVAKLAKLI 393 >gi|134093921|ref|YP_001098996.1| MocR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 469 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 114/448 (25%), Positives = 196/448 (43%), Gaps = 38/448 (8%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 L +Q + +I G+L PG R+ S + + Q V+ TV AYE L +IE+ Sbjct: 17 LSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQMIETFGAK 76 Query: 66 GYFVRQQAETIARPTASPPVQADHPAWQQSTEVDVSRLVLATLKTIQQDGTVPLGSPYPN 125 G V + T TA P +A P A +KT Q+ P Sbjct: 77 GTRVAPRLHT----TAGKP-EAPQPG--------------AFMKTYQEMMAGPAIFQLGI 117 Query: 126 PAL--FPSHRLAQY-AGRIARHASQSSVFDDLPPGHPELLRQIARRY-LENGLKVDPAEI 181 PA+ FP A+ + + + S SS+ P G EL +++A + L P ++ Sbjct: 118 PAMEGFPDKLFARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHCFPEQV 177 Query: 182 VVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRGIDVAA 241 +T G + + L L+ + G + +E P F +E + + +P D G+DV Sbjct: 178 FITSGYSSGLGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVD-AEGLDV-- 234 Query: 242 LEERLQTQAVAA-CMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSELYYGN 300 + ++ A AA +V P Q PLG + + +L+ AA + IIE+ SEL Sbjct: 235 -DYGIKNAADAALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEG 293 Query: 301 AHPSSLKNYDRDGLVLHCSSFSKSLTSAHRIGWAMPGRYRAQVEKLKFLNTLATPTAP-- 358 +L + D V+H SFSK+++ R+G+ + A+ + + TLA +P Sbjct: 294 RPAPALASLDEGKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFS-EIVATLAPAPSPVI 352 Query: 359 QRAIAEYLTQGGYERHLRRVRRAFAQQRD-MMRHFVLRFFPAGTQVSEPEGGYVLWVELP 417 Q A A+++ G Y + +RR++R ++ Q D + +R + G + + LP Sbjct: 353 QLATAQFMHDGHYIQRVRRLKRLYSAQSDGLCEQLRMR------DAEWIKAGLAVLLRLP 406 Query: 418 PQVDAMELYRRSLALGITVAPGRIFAAT 445 +++ R + +GI +P + AT Sbjct: 407 AGAPDVQIVREARNIGIAPSPLSAWFAT 434 >gi|161485636|ref|YP_001100411.2| aminotransferase AlaT [Herminiimonas arsenicoxydans] Length = 407 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 15/257 (5%) Query: 173 GLKVDPAEIVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTD 232 G+ +D +I + GA+E I + + A+ GD + V +P + A+ G + D Sbjct: 92 GVTID--DIYLGNGASELIVMSMNALLNTGDEVLVPSPDYPLWTAAVSLSGGTPVHYVCD 149 Query: 233 PRRGI--DVAALEERLQTQAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIEN 290 + D+ + +++ + A ++ PN NP G P +++V LA +HQ+ + + Sbjct: 150 EQADWFPDIDDIRKKINSNTKAIVVINPN--NPTGALYPVELLQQIVDLAREHQLIVFAD 207 Query: 291 AVYSELYYGNAHPSSLKNYDRDGLVLHCSSFSKSL-TSAHRIGWAM-PGRYRAQVEKLKF 348 +Y ++ Y A S+ + D L + + SK+ +R GW + G R + ++ Sbjct: 208 EIYDKVLYDGAKHDSIASLADDVLFITFNGLSKNYRACGYRAGWMIVSGEKRYAKDYIEG 267 Query: 349 LNTLATPTAPQRAIAEYLTQ---GGYE--RHLRRVRRAFAQQRDMMRHFVLRFFPAGTQV 403 LN LA+ A +Y Q GGY+ L +QRD+ H +L P T V Sbjct: 268 LNMLASMRLCANAPGQYAIQTALGGYQSINDLVGPGGRLTRQRDLA-HKLLTEIPGVTCV 326 Query: 404 SEPEGGYVLWVELPPQV 420 +P+ ++ L P++ Sbjct: 327 -KPKSALYMFPRLDPKM 342 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 930,821 Number of extensions: 38129 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 6 Length of query: 480 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 395 Effective length of database: 720,272 Effective search space: 284507440 Effective search space used: 284507440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)