BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1557.p (775 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydroge... 138 1e-33 gi|134096579|ref|YP_001101654.1| NAD dependent formate dehydroge... 135 9e-33 gi|134094636|ref|YP_001099711.1| formate dehydrogenase subunit a... 122 4e-29 gi|134093705|ref|YP_001098780.1| putative periplasmic assimilato... 108 1e-24 gi|134093742|ref|YP_001098817.1| arsenite oxidase large subunit ... 56 7e-09 >gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydrogenase subunit alpha Fdh1A [Herminiimonas arsenicoxydans] Length = 946 Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 161/679 (23%), Positives = 262/679 (38%), Gaps = 118/679 (17%) Query: 103 DYELEEHGRLTHPMVYDAATDK--------------YRKIEWSAAFELMAKHLNALPD-- 146 DY H RLT P++ A K +R+ W A E+ + + D Sbjct: 275 DYANHPH-RLTKPLIRRADAPKRGDFVMDPDRVMEVFREATWEEALEVAGGNFAKIRDTH 333 Query: 147 --PDMADFYVSGRASNEAAFLFQLFVRQ-YGTNNFPDCSNMCHEPTSVGLPGTVGIGKGT 203 +A F S + SNE A+LFQ VR +G+NN C+ +CH + V L +G G + Sbjct: 334 GKKSLAGFG-SAKGSNEEAYLFQKLVRTGFGSNNVDHCTRLCHASSVVALLEGIGSGAVS 392 Query: 204 VLLEDFDHCDTLLLFGQNPATNHPRMMGELRHASKRGATIVAINPLKERGLERFADPQSK 263 + D + +++ G NP NHP +++A G ++ +P + Sbjct: 393 NPVMDVTKAEVVIIIGANPTVNHPVAATWIKNAVSNGTKLIVCDP-------------RR 439 Query: 264 VEMLTMGSTRISSMFIHPKLGGDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTA 323 +M RI+ F+ K D+A++ ++ + TE ++D FIE T Sbjct: 440 TDM-----ARIAHRFMQFKADTDVAMLNAMMNVIV----------TEGLVDKEFIESRTI 484 Query: 324 GFEEFAAQARAESWNDIVEESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQ 383 G+EE + + G+ E + +A++Y KA + WGMG++QH + + Sbjct: 485 GYEELRKNVEGYTPELMAPICGIDAETLRYVARLYATSKASMILWGMGVSQHIHGTDNAR 544 Query: 384 LLSNMMMLRGNIGRQGAGLCPVRGHSNVQGDRTVGI------------DEKPTPAFLDRL 431 L + ++ G IGR G GL P+RG +NVQG G+ D K F Sbjct: 545 CLIALSLMTGQIGRPGTGLHPLRGQNNVQGASDAGLIPMVYPDYQSVSDPKIRANFAKAW 604 Query: 432 EQVFGFKAPRHHGNDTVGSVMAMLEGRTKVFIGLGGNFAMATPDTPRTFEALRSCN-LTV 490 P G V + A+ +G+ + G N AM+ PD EAL + + L V Sbjct: 605 NMSVDLLDP-EPGLTVVEIMHAITDGKIRGLYVQGENPAMSDPDANHAREALAALDHLVV 663 Query: 491 HITTKLNRSHLVHGKDALILPTMGRTEIDVQKSGPQGVTVEDSMSMVHVSYGINKPASEH 550 ++L +ILP E K+G T ++ V + P E Sbjct: 664 QDIFLTETAYLAD----VILPASAFPE----KTG----TFTNTDRTVQMGRQALNPPGE- 710 Query: 551 LMSETAIVAHLAEATMKSRNNGPKIDWLWYAEDYSRIRDAIEKVYDAFKGYN-------- 602 + I+ +A ++ W + S + D + + G Sbjct: 711 AKQDLWIIQQMAN----------RLGCNWNYKHVSEVFDEMRHTMPSIAGITWERLERED 760 Query: 603 ------ERIANPGGFHLGVASRDRVWKTGSGKANFIVHEIPKDTPIHRARAIHGEKLLTL 656 E+ +PG + V S R SG+A F+ +I I A E + L Sbjct: 761 SVTYPCEKEGDPGEPVVFVDSFPR----ESGRARFVPADI-----IPAAERPDTEYPMVL 811 Query: 657 MTTRSHDQYNTTIYGMDDRYRGVFGQRRVVFIHPQDLQMLGLKDGEWVDITSVWDDGVER 716 +T R + ++T + IHP DL +G K G+ + + S R Sbjct: 812 ITGRQLEHWHTGSMTRRATVLDSIEPDPIALIHPLDLANMGGKPGDIITLES-------R 864 Query: 717 RAEGFLLVEYE--IPRGCI 733 R E L + PRG + Sbjct: 865 RGEVSLYARADDSSPRGAV 883 >gi|134096579|ref|YP_001101654.1| NAD dependent formate dehydrogenase subunit alpha fdsA [Herminiimonas arsenicoxydans] Length = 956 Score = 135 bits (339), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 40/320 (12%) Query: 111 RLTHPMVYDAATDKYRKIEWSAAFELMA---KHLNALPDPDMADFYVSGRASNEAAFLFQ 167 R+ PM+ +D +R++ W A A K + A D VS R +NE +L Q Sbjct: 294 RMLKPMIRSKISDPWREVSWEEAINYTASEFKRIQAKYGKDSIGGLVSSRCTNEEGYLVQ 353 Query: 168 LFVRQ-YGTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQNPATNH 226 VR +G NN C+ +CH PT GL T+G GT E D +++ G NP H Sbjct: 354 KLVRAAFGNNNVDTCARVCHSPTGYGLKVTLGESAGTQTFESVMKSDVIVVIGANPVNAH 413 Query: 227 PRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMFIHPKL--G 284 P +++ ++GA ++ ++P R E P + + H KL G Sbjct: 414 PVFASQMKRRIRQGAKLIVVDP---RTTEMVKSPHVQADY-------------HLKLMPG 457 Query: 285 GDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTAG-----FEEFAAQARAESWND 339 ++A++ + A +E++ FI + +E F Q E+ + Sbjct: 458 TNVAIVNAL----------AYVILSEKLHKPEFIAERCEADSFKEWEHFILQE--ENSPE 505 Query: 340 IVEE-SGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQ 398 VE+ SGV EDI A++Y K +G+G+T+H T+ ++N+ M GN+GR+ Sbjct: 506 AVEKISGVPAEDIRAAARMYANAKNGSIYYGLGVTEHAQGSTTVIGIANLAMATGNVGRE 565 Query: 399 GAGLCPVRGHSNVQGDRTVG 418 G G+ P+RG +NVQG +G Sbjct: 566 GVGVNPLRGQNNVQGSCDMG 585 >gi|134094636|ref|YP_001099711.1| formate dehydrogenase subunit alpha FdnG (partial match) [Herminiimonas arsenicoxydans] Length = 988 Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 138/329 (41%), Gaps = 37/329 (11%) Query: 106 LEEHG----RLTHPMVYDAATDKYRKIEWSAAF-ELMAKHLN--ALPDPDMADFYVSGRA 158 L EHG RL +PM KY++I W A E+ AK L+ PD F S + Sbjct: 123 LREHGHGEYRLKYPM--KLVNGKYQRISWDQAMNEITAKMLDIKKASGPDSVFFVGSSKH 180 Query: 159 SNEAAFLFQLFVRQYGTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLF 218 +NE A L + FV +GTNN + +CH T G+ T G G T D + L Sbjct: 181 NNEQAALLRKFVSFFGTNNTDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNSKAALYI 240 Query: 219 GQNPATNHPRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMF 278 G N A HP M + HA + G ++ ++P RF +K + + Sbjct: 241 GSNAAEAHPVSMLHMLHAKENGTKMIVVDP-------RFTRTAAKAD-----------QY 282 Query: 279 IHPKLGGDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTAGFEEFAAQARAESWN 338 + + G D+ + G++ + G E D +I G E+ A+ + Sbjct: 283 VRIRSGTDIPFLYGLLYHIFK-------NGWE---DKKYINDRVYGMEKVKAEVMTWTPE 332 Query: 339 DIVEESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQ 398 + E GV+ ++ + A+ K + W MG TQH A ++ + + GNIG Sbjct: 333 KVEEACGVTEAEMYRAAETMAKNRPSTLVWCMGQTQHSIGNAMVRASCIVQLALGNIGVS 392 Query: 399 GAGLCPVRGHSNVQGDRTVGIDEKPTPAF 427 G G RGH NVQG VG + P + Sbjct: 393 GGGANIFRGHDNVQGATDVGPNPDSLPGY 421 >gi|134093705|ref|YP_001098780.1| putative periplasmic assimilatory nitrate reductase, large subunit [Herminiimonas arsenicoxydans] Length = 944 Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 156/398 (39%), Gaps = 39/398 (9%) Query: 106 LEEHGRLTHPMVYDAATDKYRKIEWSAAFELMAKHLNAL---PDPDMADFYVSGRASNEA 162 L++ R +P + A +D+ + W+ + + A PD FY+SG+ E Sbjct: 82 LQQQSRALYPEMRLARSDERERTSWATTMDFIVNKFAATIRDQGPDSVGFYLSGQLLTED 141 Query: 163 AFLFQLFVRQY-GTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQN 221 ++F + GTNN S +C G T+G ED D + + + G N Sbjct: 142 YYVFNKLAKGLIGTNNVDTNSRLCMSSAVAGYKQTLGADAPPPCYEDIDQAEVIFIVGSN 201 Query: 222 PATNHPRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMFIHP 281 A HP + + A K + I ADP+ + R + +F+ Sbjct: 202 TAYAHPILYRRIEDARKANPQLKII----------VADPRRT------DTAREADLFLPI 245 Query: 282 KLGGDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTAGFEEFAAQARAESWNDIV 341 G D+AL G++ + E ++D+ +I HT F E R + + Sbjct: 246 LPGTDVALFNGMLHICL----------WEDLVDLDYIAAHTEDFAELKQTVREYTPKFVA 295 Query: 342 EESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQGAG 401 + G+ ED+ + A+++ K A ++ + GL Q A L N+ + IG+ GAG Sbjct: 296 DICGIKEEDLMQAARMFGKSTATLSMYCQGLNQSSSGTAKNAALINLHLATHQIGKPGAG 355 Query: 402 LCPVRGHSNVQGDRTVG--------IDEKPTPAFLDRLEQVFGFK-APRHHGNDTVGSVM 452 + G N G R VG + P + +++G P G V Sbjct: 356 PFSLTGQPNAMGGREVGGLATMLSAHRDLANPQHRAEIAKLWGVADVPATPGKSAVEMFE 415 Query: 453 AMLEGRTKVFIGLGGNFAMATPDTPRTFEALRSCNLTV 490 A+ G K+ + N A + P+ EALR+ L + Sbjct: 416 AVRTGEIKIIWIVCTNPAQSMPEQAMIREALRNAELVI 453 >gi|134093742|ref|YP_001098817.1| arsenite oxidase large subunit [Herminiimonas arsenicoxydans] Length = 826 Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 100/253 (39%), Gaps = 47/253 (18%) Query: 177 NFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQNP---ATNH------P 227 N P ++ CH +G IG+ ED D + G NP TN+ P Sbjct: 197 NRPAYNSECHATREMG------IGELNNSYEDAQVADVIWSIGNNPYETQTNYFLNHWLP 250 Query: 228 RMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGST---RISSMFIHPKLG 284 + G K+ + P GL F DP+ + T R+ + I+P G Sbjct: 251 NLNGSTEEKKKQWFAGEPVGP----GLMIFVDPRRTTSIAIAEQTAKDRVLHLDINP--G 304 Query: 285 GDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTAGFEEFAAQARAESWNDIVEES 344 D+AL G++ ++ +A+ FI QHT GFE+ A + S D + Sbjct: 305 TDVALFNGLLTYVVQQGWIAKE----------FIAQHTVGFED-AVKTNQMSLADCSRIT 353 Query: 345 GVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATI---------QLLSNMMMLRGNI 395 GVS + + + A+ K KA M T H Y I L ++++ N+ Sbjct: 354 GVSEDKLRQAAEWSYKPKAAGK---MPRTMHAYEKGIIWGNDNYNIQSSLLDLVIATQNV 410 Query: 396 GRQGAGLCPVRGH 408 GR+G G + GH Sbjct: 411 GRRGTGCVRMGGH 423 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,551,305 Number of extensions: 66938 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 5 Length of query: 775 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 686 Effective length of database: 707,092 Effective search space: 485065112 Effective search space used: 485065112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)