BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1556.p
         (172 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...   115   1e-27
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    95   2e-21
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    68   3e-13

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  115 bits (288), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 86/152 (56%)

Query: 21  LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGYYARVNPESLG 80
            D+ D  +L  LQ  GR+S  EL E+V LS   C  RV+R+E++GVI GY A V+  +LG
Sbjct: 4   FDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAALG 63

Query: 81  ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 140
             +  FV + +  +      +  + + + PE+ EC+ +SGDFDYL+K     +      L
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSSFL 123

Query: 141 GDILLQLPGAAQSKSYVVMEEIKETLALPLDD 172
            D L+Q+PG A  +S V +EEIK    LPL D
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIKPASPLPLPD 155


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 94.7 bits (234), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 75/123 (60%)

Query: 18  IRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGYYARVNPE 77
           + TLDK+D ++L +LQKD +I  + L ++V +S   C+ R+R M   G+IS   A ++P 
Sbjct: 4   LHTLDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPF 63

Query: 78  SLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYR 137
           +LG  +L F+E++L ++S     +F   + R PEV +C+ VSGD+DY +   +  M  Y 
Sbjct: 64  ALGYGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMDAYY 123

Query: 138 KLL 140
           + +
Sbjct: 124 QFV 126


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 67.8 bits (164), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query: 21  LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGYYARVNPESLG 80
           LD+LD RIL  LQ D   +  +L   V  S   C+ RV+R+   GVI    A V+P+ +G
Sbjct: 8   LDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKIG 67

Query: 81  ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 140
           A L   VEITL++++     +F   V     V +C+ VS   D+++  ++  M  Y  L+
Sbjct: 68  AGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNALV 127

Query: 141 GDILLQLPGAAQSKSY 156
             +          KS+
Sbjct: 128 HRLFASHANVRNVKSF 143


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 296,398
Number of extensions: 11131
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 96
Effective length of database: 749,927
Effective search space: 71992992
Effective search space used: 71992992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)