BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1554.p (545 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 295 4e-81 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 287 1e-78 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 286 1e-78 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 279 2e-76 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 279 3e-76 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 295 bits (755), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 193/398 (48%), Positives = 262/398 (65%), Gaps = 9/398 (2%) Query: 128 YRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLR-----DVFLQIVKQYD-QAVQDHI 181 Y + R + AD++ + AEL TT A +L +V ++ KQ + +A Q H+ Sbjct: 124 YEKEMWRALALADKEPLQQRSAEL--TTSMAQTRLHANTLDNVLTELSKQKEVRAAQAHV 181 Query: 182 SRSAESVDRTAWYLVALLAAMVVVGVAFSVVIQRSITRQLGGEPLYAVAIAQAIADGDLA 241 + + D + ++V L+ G+ V+I R++ QLGGEP YA +A IA GDL Sbjct: 182 -ETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLT 240 Query: 242 SRVKLRQGDQGSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASEIADGNLNLSRRTEEQA 301 + LR DQ S+L AM MR L+ +V +V I T + +IA GNL+LS RTEEQA Sbjct: 241 VAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQA 300 Query: 302 SNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDAVAGVVDLMGDIASSSA 361 S LE+TA+SME++T +VKQNA+ +A A AS A +GG V+ VVD MG I SS Sbjct: 301 SALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSR 360 Query: 362 RIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAHRSAQAAREIKT 421 +I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AA+EIK Sbjct: 361 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 420 Query: 422 LIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVSTQEQTQGIAQVGTAVEQ 481 LI DSV+KVD+G V++A + +V +++VA ++++I + +EQ+ GI QV A+ Q Sbjct: 421 LIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQ 480 Query: 482 LDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 +D TQQNAALVE++AAA++SL QA+ L E++ VFKL Sbjct: 481 MDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 287 bits (734), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 224/544 (41%), Positives = 312/544 (57%), Gaps = 59/544 (10%) Query: 4 LQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQERQMYQERIAPMQKLNTAALAM 63 + NL++ RL L A+ L+ M M+ ++ L ++ +M E A ++L Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRM--EEAAEQERL------- 53 Query: 64 AIHFRRGYSYIYPNANDPKSRVGTRALNQKAEAQIQDAF-----------DYLQGAEKSP 112 +I + G S AN ++ R+ NQ+ + Q Q+ + L+ S Sbjct: 54 SIQWHAGNS-----ANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSE 108 Query: 113 QLEPLLAALNQAWPAYRESFQRLMDKADQDDVPGALAELQK----TTDPAHVKLRDVFLQ 168 + + L++A+ Y + ++ + K D P A E +K DPA Sbjct: 109 EGKKLMSAVGDKRTVYMD-IRKEVFKLKADGSPAAEEEAKKIIASKMDPA---------- 157 Query: 169 IVKQYDQAVQDHIS-------RSAESVDRT----AWYLVALLAAMVVVGVAFSVVIQRSI 217 ++ Y + VQD + + VD +L+ L A + + + ++ RSI Sbjct: 158 -LETYSKTVQDVVDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSI 216 Query: 218 TRQLGGEPL-YAVAIAQAIADGDLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYKS 275 TR PL YAV +A+ +A GDL +R+++ D+ G +L A+ M L V EV Sbjct: 217 TR-----PLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTG 271 Query: 276 CHAIDTGASEIADGNLNLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDA 335 I T +++IA GNL+LS RTEEQAS+LE+TA+SME+LT +VKQNA +A + A A Sbjct: 272 IETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSA 331 Query: 336 SQEASQGGDAVAGVVDLMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQG 395 S A +GG V+ VVD M DI SS+ +I +II VIDGIAFQTNILALNAAVEAARAGEQG Sbjct: 332 SGVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQG 391 Query: 396 RGFAVVASEVRTLAHRSAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVA 455 RGFAVVASEVR LA RSA AA+EIKTLI DSVDKVD G V EA + VV+ V++V Sbjct: 392 RGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVT 451 Query: 456 TLVTEIGVSTQEQTQGIAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQ 515 +++EI ++QEQ+ GI QV A+ Q+D TQQNAALVE++AAAAESL+ QA KL E + Sbjct: 452 DIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVS 511 Query: 516 VFKL 519 VFKL Sbjct: 512 VFKL 515 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 286 bits (733), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 215/534 (40%), Positives = 311/534 (58%), Gaps = 38/534 (7%) Query: 1 MSFLQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISS----QERQMYQERIAPMQKL 56 M F +NL++ RL + L LV M M + L ++ E +ER+A Sbjct: 1 MQF-KNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQ--- 56 Query: 57 NTAALAMAIHFRRGYSYIYPNANDPKSRVGTRALNQKAEA------QIQDAFDYLQGAEK 110 I ++ +DP+ + L Q+ A + QD + L + + Sbjct: 57 ----WIKGIETNTVRTFARVRTSDPEQ---DKILQQEMSAISAAVSKQQDELETLVVSAE 109 Query: 111 SPQLEPLLAALNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDVFLQIV 170 +L +A + A R+ L + A ++ A+A K PA D ++Q V Sbjct: 110 GKKLLATVAEKRATYTAIRDDVMNLRE-ARGAELQNAIANKMK---PAA----DAYIQSV 161 Query: 171 KQYDQAVQDHISRSAESVD---RTAWYLVALLAAM-VVVGVAFSVVIQRSITRQLGGEPL 226 + A ++ + VD ++A L+ +L + + +G+ + ++ RSIT+ L Sbjct: 162 EAVVNAQINNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLD---- 217 Query: 227 YAVAIAQAIADGDLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASE 285 YAV++A+ +A GDL R+ + D+ G +L A++ M L+ + +V I T +++ Sbjct: 218 YAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQ 277 Query: 286 IADGNLNLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDA 345 IA GNL+LS RTEEQAS+LE+TA+SME+LT +VKQNA +A + A AS A +GG Sbjct: 278 IASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTV 337 Query: 346 VAGVVDLMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 405 V+ VVD M I +S+ +I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 338 VSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 397 Query: 406 RTLAHRSAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVST 465 R+LA RSA AA+EIKTLI+DSVDKVD+G V EA + VVD V++V ++ EI ++ Sbjct: 398 RSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAAS 457 Query: 466 QEQTQGIAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 QEQ+ GI QV A+ Q+D TQQNAALVE++AAAAESL+ QA+ L + + +FKL Sbjct: 458 QEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 279 bits (714), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 213/531 (40%), Positives = 318/531 (59%), Gaps = 28/531 (5%) Query: 4 LQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQERQMYQERIAPMQKLNTAALAM 63 + N+++ RL L L L+ + M + I L +I+ R + + ++ + L Sbjct: 3 IANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGT 62 Query: 64 AIHFRRGYSYIYPNANDPKSR-VGTRALNQKAE--AQIQDAFDYLQGAEKSPQLEPLLAA 120 +++ R + + A+DP+S+ +A+ +++ +IQ + + ++K +L +A Sbjct: 63 SVNASRTLALV--KASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAK 120 Query: 121 LNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDVFLQIVKQYDQAVQDH 180 A+ R+S L KA G +AE + D V D ++ VK ++ Sbjct: 121 KRSAYIDIRKSI--LGVKA-----GGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENE 173 Query: 181 ISRSAESVD------RTAWYLVALLAAMVVVGVAFSVVIQRSITRQLGGEPLY-AVAIAQ 233 + + ES+ R A + A++A ++ +A+ + + ITR PL+ A+ +A+ Sbjct: 174 VKLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTV--GITR-----PLHEALKVAE 226 Query: 234 AIADGDLASRVKL--RQGDQGSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASEIADGNL 291 ++A+GDL +R + Q + G +L+A+ M+ L V ++ I T +SEIA GNL Sbjct: 227 SVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNL 286 Query: 292 NLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDAVAGVVD 351 +LS RTE+QAS+LE+TA+SME+LT +VKQNA +A + A AS A +GG V+ VVD Sbjct: 287 DLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVD 346 Query: 352 LMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAHR 411 MG I +S+ +I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LA R Sbjct: 347 TMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR 406 Query: 412 SAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVSTQEQTQG 471 SA AA+EIKTLI DSV+KVD+G V EA + +VD V++VA ++ EI ++QEQ+ G Sbjct: 407 SAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDG 466 Query: 472 IAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKLPVG 522 I QV AV Q+D TQQNAALVE++AAAAESL QA L E + VF++ G Sbjct: 467 IEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSG 517 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 279 bits (713), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 209/530 (39%), Positives = 314/530 (59%), Gaps = 34/530 (6%) Query: 6 NLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQE---RQMYQERIAPMQKLNTAALA 62 N+ + RL L+ L L+ ++ + L+ I +Q+YQ R ++K++ Sbjct: 2 NITLKTRLGLVIGLL---ALISMAVGLLGLNGIGRSNGDLQQVYQHRTVALEKISRIDRL 58 Query: 63 MAIHFRRGYSYIY-PNANDPKSRVGTRALNQKAEAQIQDAFD-YLQGAEKSPQLEPLLAA 120 + + ++ P+A S AL K A+I A++ Y+ G+ L P Sbjct: 59 LLANRLALSEALHDPDAEKTASHT---ALIAKNAAEITQAWNEYMDGS-----LLPDERR 110 Query: 121 LNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDVFLQIVKQYDQAVQ-- 178 L + + ++R R++ QD + A A LQK ++L+ F ++V ++ Sbjct: 111 LAENFASHRA---RMV----QDGLFPAAAALQKGQVVEAMQLQQQFQKLVPAVRNSIDAL 163 Query: 179 -----DHISRSAESVDR---TAWYLVA-LLAAMVVVGVAFSVVIQRSITRQLGGEPLYAV 229 D + E+ + T ++A +L A V ++ RS+ QLGGEP YA Sbjct: 164 RKLQVDEAGLAYEAAQQRYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAA 223 Query: 230 AIAQAIADGDLASRVKLRQGDQGSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASEIADG 289 I + IA GDL++ + R+GD+ S+L AM+ M+ L+ V ++ ++ I T + +IA G Sbjct: 224 QIVRRIAGGDLSATIITRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAG 283 Query: 290 NLNLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDAVAGV 349 N++LS RTE+QAS+LE+TA+SME+LT +VKQNA +A + A AS A QG VA V Sbjct: 284 NIDLSARTEQQASSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQV 343 Query: 350 VDLMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLA 409 V M I++S+ RI +II VI+GIAFQTNILALNAAVEAAR GEQGRGFAVVA+EVR+LA Sbjct: 344 VTTMDSISASAGRIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLA 403 Query: 410 HRSAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVSTQEQT 469 RSA+AA+EIK+LI+DS++KV +G V +A ++ +V + QV ++ EI +++EQT Sbjct: 404 QRSAEAAKEIKSLIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQT 463 Query: 470 QGIAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 GI QV A+ Q+D TQQNAALVE++AAAA SL QA L++++ VFKL Sbjct: 464 AGIEQVNQAIGQMDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKL 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.126 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 681,444 Number of extensions: 22546 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 14 Length of query: 545 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 459 Effective length of database: 716,977 Effective search space: 329092443 Effective search space used: 329092443 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)