BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1550.p
         (845 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093732|ref|YP_001098807.1| putative surface adhesin [Hermi...   534   e-153

>gi|134093732|ref|YP_001098807.1| putative surface adhesin
            [Herminiimonas arsenicoxydans]
          Length = 2104

 Score =  534 bits (1376), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 366/862 (42%), Positives = 520/862 (60%), Gaps = 40/862 (4%)

Query: 18   RQLGDGFYEQQLVQRQIQQITGQRYLAGYSSNEAQYQALMNAGLQVAQAQRYTVGVALTD 77
            ++LGDGFYEQ++V+ QI Q+TG+R+L GY+S E QYQALM AG   A+      GV+LT 
Sbjct: 852  KRLGDGFYEQRIVREQIAQLTGRRFLDGYASEETQYQALMQAGAAYAKEWELVPGVSLTA 911

Query: 78   AQVAALKTDIVWLVKQTVTLADGSTQEVLVPQVYVHASNVEVTGQGTLIAGNDVAFQAAQ 137
            AQ+A L +DIVWLV Q V L DG+    LVPQVYV     ++   G+L+AG +V  Q + 
Sbjct: 912  AQMAQLTSDIVWLVAQEVVLPDGAITTALVPQVYVMPRQGDLAANGSLLAGQNVNIQLSG 971

Query: 138  DIVNSGGTIAARKGVSLAGANLQNLGGRISGADVQVAAAQDINNIGGTIDARNTLVATAG 197
            D+ NSG TIA R  + +   N+QNLGG ISG  V VAA QD+ N GG + A ++LVATAG
Sbjct: 972  DLTNSG-TIAGRNVMQITANNVQNLGG-ISGKAVSVAAQQDLTNFGGRMMAEDSLVATAG 1029

Query: 198  RDINSASTT-VATANA---VTSGTNINQNASMSVSEANGSLTAVAGRDINLKAS-GTSAD 252
            RD+   STT   TA+A    +S T +N+ A + V+   G L A AG D ++ A   +SA 
Sbjct: 1030 RDLTVQSTTSTGTASAGRSSSSLTQVNRVAGLYVTGEKGILVASAGNDFSVLAGVLSSAG 1089

Query: 253  NVTLVAQRDVNLATVHETSQEKLAWDNDNRAEVNRDNAIGS-TVQGKDISVTAGRDINAQ 311
            ++ + A  ++NL TV    +  L  ++ N    +    +GS  V G   ++  G + NA+
Sbjct: 1090 DIQVTAGNNINLGTVETGYKSDLTANDRNYMRASGTQEVGSQIVSGGSTNIMVGNNFNAR 1149

Query: 312  AVYVNAEGSLAANAGNNVNIGTDVSTANARDQHKKTDAGGVLSSRTVTTDDSSSERINQG 371
            A  V+  G LA +AG +V I T+       D  +   + G LSS +  + + S      G
Sbjct: 1150 AATVDVTGDLALSAGGDVRI-TEGRAIRQSDDARYAKSKGFLSSSSTESREQSLSDSAIG 1208

Query: 372  TTLSGNTVVVRAGKDINVTGSNVVATQGLGMAAGNDVNIVAAVDSSTKNNFRKETTSGVM 431
            +++ G TV + +G D  + GSNVV      + AG+D++I AA ++S  ++F +   SG+ 
Sbjct: 1209 SSMGGKTVTIASGGDTLIRGSNVVGDNDTIVVAGHDLSIEAATNTSQGSSFNETKKSGLF 1268

Query: 432  GAG-FGVTIGTREQSHDGKSQGQTASASTIGSTDGNVSIVAGNRYTQVGSDVMAPKGDID 490
             +G   +T G +EQS   ++   ++  ST+GS  G+V +VAG  Y Q+GSDV+AP GDI 
Sbjct: 1269 SSGGLSITYGKQEQSTGQQNTRTSSVGSTVGSIAGDVLLVAGQTYNQIGSDVLAPSGDIS 1328

Query: 491  IAAKSVEIRAAEQASRTETEDKYKQSGLTVAVTSPVISAMQTVDQMVESSGKTKNGRVKA 550
            IAAK V+I AA       TE  +KQSGLT+A+TSPVISA+QTV QM +++ KT++GR++ 
Sbjct: 1329 IAAKKVDIVAASNTYTNSTEQHFKQSGLTLAITSPVISAIQTVQQMADAASKTQDGRMQV 1388

Query: 551  -------------LAAATAGMSLYSAAGEMQ--------------KAGSAEGGSNIGISA 583
                           A  AG        E Q              +A +A+    I +S 
Sbjct: 1389 LAGATAGLAAKDGYKAIQAGQGTTINGKENQITTGSDTEGNPTSREATAADQAGGINLSI 1448

Query: 584  TIGSSQNGSRSEQNTVTQRGSTVASGGNMSIRATGDGANSNITIAGSDINAKGNLALKAD 643
            +IG+S + S++ Q      GSTV +GGN++I A+G G +S++T+ GSDI+A  N+ + A+
Sbjct: 1449 SIGASSSESKTTQTGNHAIGSTVVAGGNVTIVASGAGKDSDVTVQGSDISAGNNVVISAE 1508

Query: 644  NDINLIAAQNSDEQHSTRSSSSWGVGITAQIGSQSKLGITANAAGSRGKSDGKDVSNVMT 703
            ++I L+AAQN+DEQHST  SSS   G        S  G+TA+A+  RG +DGKDVS   T
Sbjct: 1509 DEIKLLAAQNTDEQHSTNKSSS---GSIGISIGTSGFGVTASASTGRGNADGKDVSWTNT 1565

Query: 704  QVRSGGQIKIDSGRDTNLIGATVSGEQVQANVGRDLNIASVQDTSTFKSRDQSIGGSATI 763
             + +G Q+ + SG DT L GA V G+QV A VG DL I S+QDTS + S+ +++GGS TI
Sbjct: 1566 HINAGNQLAMQSGGDTTLKGAVVEGKQVVAGVGGDLRIESLQDTSEYGSKQKNMGGSITI 1625

Query: 764  GYGSSASISASRSRVDADYASVGQQAGIMAGNGGFQINVKGNTDLKGAQIASTDQAVEQG 823
            G G S SIS S+S  ++DYASV +Q+GI AG+ GFQ+ V GNTDL GA IAST++A    
Sbjct: 1626 GAGMSGSISYSKSSANSDYASVSEQSGIRAGDDGFQLKVDGNTDLNGAIIASTERAARDD 1685

Query: 824  RNSLTTGTLTSSDIQNRSQYSA 845
            +N L T +LTSSDI N ++ SA
Sbjct: 1686 KNILVTASLTSSDIANHAEASA 1707


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.306    0.122    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,367,495
Number of extensions: 54403
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 2
Length of query: 845
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 755
Effective length of database: 703,797
Effective search space: 531366735
Effective search space used: 531366735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 133 (55.8 bits)