BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1548.p
         (626 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093732|ref|YP_001098807.1| putative surface adhesin [Hermi...   339   3e-94

>gi|134093732|ref|YP_001098807.1| putative surface adhesin
           [Herminiimonas arsenicoxydans]
          Length = 2104

 Score =  339 bits (869), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 246/581 (42%), Positives = 333/581 (57%), Gaps = 69/581 (11%)

Query: 1   MNRQRYKLVFNRHRGQLMAVAEIASSIQHQGRTA--GPSGT----LPDLLPSALRFS--L 52
           MN+  Y++ FN+ RG LM VAE  ++ Q +G  A    SG     LP +    + F+  L
Sbjct: 1   MNKHLYRIAFNQARGILMVVAE-NTTTQGKGDAAPVASSGKQVADLPCMQMKTISFAAKL 59

Query: 53  LSVALALAMNTVAHAQILGDRTAPRTQQPTVLVTPNGVPVVNIQTPSTAGVSLNRYRQFD 112
           +   ++L+M  +A+AQI+ D  AP  Q+PT+L T NG+  VNIQTPS AGVS N Y QFD
Sbjct: 60  VVGVMSLSM-PLAYAQIVADPNAPGNQRPTILQTANGLSQVNIQTPSAAGVSRNTYSQFD 118

Query: 113 VGTNGVILNNARSTTSTQLGGYVAGNPWLATGAARVIVNQVNSPNPSYLRGYLEVAGNRA 172
           V +NG ILNN+R+ T+TQ GG+V  NPWL  GAARVI+N+VNS NPS LRGY+EVAG +A
Sbjct: 119 VQSNGAILNNSRTNTATQTGGWVQANPWLVGGAARVILNEVNSSNPSQLRGYVEVAGQKA 178

Query: 173 QVVVANPAGITCAGCGFINANRATLTTGVPQIN---NGNLDSYRVASGAVNIEGNGLDAS 229
           +V++ANPAGI   G GFINA+R TLTTG   +N    G+L+SYR+  G ++I+G GLD  
Sbjct: 179 EVIIANPAGIQVNGGGFINADRVTLTTGTAVMNPLHGGSLESYRIPQGTISIDGLGLDTR 238

Query: 230 RTDYAEIIARAVQVNAGVWAPELKVSAGLN---TVSADH-ASVQPGVAPSDA---APAVA 282
              Y +I+AR+VQVNAG+WA  LKV  G N   T SAD+  +V  GV P  A   AP  +
Sbjct: 239 TASYTDILARSVQVNAGIWANRLKVVTGANEVSTTSADYPGNVAQGVTPIAATGPAPQFS 298

Query: 283 IDVAQLGGMYAGHIYLTSTEHGVGVRNAGTIGAAVGQAVVTADGRLENSGSLSA------ 336
           +DVA +GGMYAGHIYL  +E G+GVRN G I AA G  V+ ++G L N G++ A      
Sbjct: 299 LDVAAIGGMYAGHIYLVGSESGLGVRNQGAINAAGGNLVLLSNGFLTNEGAIQAASSNGS 358

Query: 337 NGLLAVQTTGGVRNSGELGSKS----AASITTTALDNAGSMASSGALTVQASDSVLNTGS 392
            G L ++T+G + N G     S    AA +TT  L NAG + +   LT            
Sbjct: 359 GGNLRIETSGTINNVGAQAVISAQDHAAVVTTADLTNAGKIDAGNVLT------------ 406

Query: 393 IGGEGPVQVSATSIDNRNSLGSSASLTMQTSA--GIRNSGTLQATTDATLNAGTLDNSGT 450
                   +SA +IDN  + G  A++T + SA   + N G +   ++  L AGTLDN GT
Sbjct: 407 --------LSAQNIDNTVT-GEIAAVTSRISATDKLSNRGLIDG-SETLLQAGTLDNIGT 456

Query: 451 LSARQGSVRI-----NSSGSTTNSGRIEAVQTVAVQAD---GLTNSGNINAVDALRVQA- 501
                  + I     N+   T NS R +AV     + D   G+ N+ N     AL   A 
Sbjct: 457 GRIYGDHLGIAADVLNNDTETVNSIRSDAVIAARERLDIGAGVLNNKN----GALIFSAG 512

Query: 502 --AQAISNSGTLGANGGVELKSATLDNRGTLASSQDALTIT 540
             A AI+  G+L A G     + T++N   +  S   + I+
Sbjct: 513 TGANAINIGGSLDAQGHTTGTAGTINNEAAIIESLGGIHIS 553


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.310    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,119,877
Number of extensions: 46903
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 3
Length of query: 626
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 539
Effective length of database: 713,682
Effective search space: 384674598
Effective search space used: 384674598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 132 (55.5 bits)