BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1547.p
         (217 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094712|ref|YP_001099787.1| oxidative demethylase of N1-met...   244   4e-66

>gi|134094712|ref|YP_001099787.1| oxidative demethylase of
           N1-methyladenine or N3-methylcytosine DNA lesions,
           repair of alkylated DNA [Herminiimonas arsenicoxydans]
          Length = 216

 Score =  244 bits (622), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 141/201 (70%), Gaps = 1/201 (0%)

Query: 16  ESITEGALLLRAFVDEQEAASLMAGISKVLAASPLRHMQTPGGFRMSVAMSNCGQYGWVT 75
           E ++ GA++LR F    E   L+  + K+ + +PLRHM T GGFRMSVAMSNCG+YGWV+
Sbjct: 16  EELSPGAVVLRGFALPVEGDILLE-LEKIFSVAPLRHMVTSGGFRMSVAMSNCGKYGWVS 74

Query: 76  DRRGYRYQVLDPLAERDWPPMPEAFVALAQRAAQAAGFAAFAPDACLINRYQPGARMSLH 135
           DR GYRY   DP + + WPPMP  F  LA  AA  AGF+ F PDACLINRY PGARMSLH
Sbjct: 75  DRAGYRYDAADPDSGKRWPPMPALFSTLASEAAALAGFSDFKPDACLINRYDPGARMSLH 134

Query: 136 QDRNEADMAQPIVSVSLGLPATFLFGGLARTDKPRRLRLESGDVVVWGGPARLAFHGIDT 195
           QDR+E D +QPIVSVSLG+PA FLFGG+ R DK  R+ L  GDVVVWGG  RL +HG+  
Sbjct: 135 QDRDERDFSQPIVSVSLGIPAVFLFGGMRREDKAMRISLTHGDVVVWGGADRLRYHGVLP 194

Query: 196 LREGDHALTGNCRYNLTFRRA 216
           L+   H   G  R NLT R+A
Sbjct: 195 LKMASHPSLGEHRINLTLRKA 215


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 391,533
Number of extensions: 14355
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 139
Effective length of database: 743,337
Effective search space: 103323843
Effective search space used: 103323843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)