BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1546.p
         (392 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093400|ref|YP_001098475.1| DNA glycosylase [Herminiimonas ...   112   3e-26
gi|134093401|ref|YP_001098476.1| methylated-DNA--protein-cystein...   102   5e-23
gi|134093691|ref|YP_001098766.1| putative methylated-DNA-[protei...    69   5e-13

>gi|134093400|ref|YP_001098475.1| DNA glycosylase [Herminiimonas
           arsenicoxydans]
          Length = 500

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 7/175 (4%)

Query: 26  WQAVQGRDPTADGRFWYAVKSTGVYCKPSCGARTPLRKNVSFHDSCAAAEAAGFRPCQRC 85
           ++A+  +D   DG F+  VK+TG+YC+P C  +TP   +  F  S AAAE AGFRPC RC
Sbjct: 21  YRALAAKDARFDGVFFTGVKTTGIYCRPVCSVKTPRASSCVFFSSAAAAEVAGFRPCLRC 80

Query: 86  KPDQPP--LQQRQAQAIAQACRLIEAAQQAPATDILAQAVGLSRYHFHRLFKQHTGLTPK 143
           +P+  P  LQQ  A A+ Q  R+   A      + LA  VGLS     R+  QH G+TP 
Sbjct: 81  RPELAPYALQQNLAYAVWQ--RIAAGALNDGDMERLAAEVGLSSRQLRRVLLQHFGVTPV 138

Query: 144 AYADAHRASRLRTQLGDS--PSVTAAFYEAGFNSSGRFYAHSAAQLGMKPATYRR 196
             A   R    +  L ++  P    A Y AGF S  RF A   A+ GM P + RR
Sbjct: 139 ELAQTQRLLFAKKLLQETRLPMSDVA-YAAGFGSIRRFNALFLARYGMAPTSIRR 192


>gi|134093401|ref|YP_001098476.1| methylated-DNA--protein-cysteine
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 163

 Score =  102 bits (253), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 3/154 (1%)

Query: 212 LGALLVAATEQGICAITLGAEAKPLVQQLQDRFPQADLAPADAAFEQTLAQVLAVLHDPQ 271
           +G LL+AAT+ GIC I    E K    + +D + Q     A    +    Q+       +
Sbjct: 11  VGILLIAATDAGICGIYF-EEHKHF--KGKDGWLQTPTQSALRHLKNAAMQLDEYFAAKR 67

Query: 272 HGAALPLDVRGTAFQQRVWQALRAVPPGVTLTYAELAARIGQPKAVRAVANACAQNEIAV 331
               + LD+ GTAFQ+ VW AL A+P G +++YA+ A  +G PKA+RAV +A  +N +++
Sbjct: 68  TRFDVALDLSGTAFQREVWSALNAIPFGQSVSYAQHAQGLGNPKALRAVGSAIGKNPVSI 127

Query: 332 LIPCHRIVRLDGSPSGYRWGVERKAALLAQEAAA 365
           ++PCHR++   G+ +GY  GVERK  LLA E+ A
Sbjct: 128 IVPCHRVIGSAGAVTGYAGGVERKRFLLALESVA 161


>gi|134093691|ref|YP_001098766.1| putative
           methylated-DNA-[protein]-cysteine S-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 184

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 60/121 (49%), Gaps = 12/121 (9%)

Query: 253 DAAFEQTLAQVLAVLHDPQHGAALPLDVRGTAFQQRVWQALRAVPPGVTLTYAELAARIG 312
           D   ++   QV   L DP     LPL   GT FQQ+VW A+  +P G  LTY ++A R+ 
Sbjct: 66  DPVAQKAAVQVERYLSDPDFHFDLPLAPIGTPFQQKVWAAIGEIPRGKVLTYGDIARRV- 124

Query: 313 QPKAVRAVANACAQNEIAVLIPCHRIVRLDG--------SPSGYRWGVERKAALLAQEAA 364
              A RAV  AC  N   ++IPCHR+    G          +G+  GV+R   LLA E  
Sbjct: 125 -QSAPRAVGQACGANWFPLVIPCHRVTAATGLGGFSHHDDETGFHVGVKR--WLLAHEKV 181

Query: 365 A 365
           A
Sbjct: 182 A 182


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 714,198
Number of extensions: 27083
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 308
Effective length of database: 723,567
Effective search space: 222858636
Effective search space used: 222858636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)