BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1541.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic...    63   2e-11

>gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic
           binding protein ABC transporter [Herminiimonas
           arsenicoxydans]
          Length = 300

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 113/239 (47%), Gaps = 14/239 (5%)

Query: 33  LAQIQARGALICATLANNEPLGFPDPQTSQIVGFDVDMCSAVARKL-------GVRMQHK 85
           L +I+  G +      ++ P  F D +  Q +G+ +D+C  +   +        ++++ +
Sbjct: 32  LKKIKETGEITIGYRESSIPFSFLDDK-QQPIGYAMDLCMKIVGTVKADLKLPALKVKLQ 90

Query: 86  SVTVEARLPTLMQGQADLLSAALGYTRQRSHQIDFTASHYQNPIKLIVHSDAGLNLVSDL 145
            VT   R+P L  G  DL   +   +  R  Q+ F  +++   +   V   + +N ++ L
Sbjct: 91  PVTSSNRIPLLNNGTIDLECGSTTNSIARQEQVAFGPTYFVINVTAAVKKSSNINTIAQL 150

Query: 146 ADKRISANRNST--PEQAAHRVLPKATL--VTFPDTPQAFLALAQGKVDALAIS--MPSG 199
             K +S    +T  P   A++    A +  +   D  +AFL +A  +  A  +   + +G
Sbjct: 151 DGKTVSTTSGTTSVPLLKAYKKAGNAQVKEIYGKDHAEAFLLMADDRAAAFVMDDILLAG 210

Query: 200 IRFVNESGGRFRFVEGALAWEPTALGVKKGEHKLLDAVNQALAALEKEGEIDALWSKWF 258
                +  G ++ +  +L  EP ++ ++KG+ +    V++++ A+ + GEID +++KWF
Sbjct: 211 QIANAKRPGDYKILPESLRQEPYSMMLRKGDPQFKALVDKSITAVMQSGEIDKIYAKWF 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 509,542
Number of extensions: 20713
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)