BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1540.p (234 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 229 8e-62 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 219 1e-58 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 200 7e-53 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 148 2e-37 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 115 2e-27 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 229 bits (585), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 166/236 (70%), Gaps = 3/236 (1%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGR-PRAS-SGRV 58 +L+ + YG I+A+ G+ L+V +GE++TLIGANGAGKTT L + G P G + Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 59 IFEGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEE-IEQGIAYVF 117 + GQ I L + E++R+ LA+ PEGR VF +++ ENL MGAF ++++ I + F Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 118 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIR 177 +FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P+LLLLDEP++GL+P+++ +IFE+IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 178 TIRASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLGH 233 ++ A G+T+ LVEQNA AL A R YV+E+G + M +L + +VR+AYLG Sbjct: 185 SVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLGE 240 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 219 bits (557), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 107/232 (46%), Positives = 156/232 (67%), Gaps = 1/232 (0%) Query: 2 LQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFE 61 L + T Y + LH VS+ V G+I ++GANGAGK+TL+ ++ G G +++ Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 62 GQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEI-EQGIAYVFGLF 120 G+++ TH I+ G++ PEGR+VFP ++V ENL +GAF +N + + +A V+ +F Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRLKERAAQ AGTMSGGEQ M++IGR LM++P+LL++DEP+LGL+PL + + F +IR I Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 A G+TV LVEQNA + L ++ GYVL G V+ + L +N +VR AY G Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 200 bits (508), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 156/236 (66%), Gaps = 4/236 (1%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +L+ + + +YG IEA G+S+ V +GE V +IG+NGAGK++ L + G + +SG + Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEE----IEQGIAYV 116 G+ + L +HE++ +G+A+ PEGR VF +V +NL +G F + + I + Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDRM 124 Query: 117 FGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEII 176 F LFPRLKER Q+AG++SGGEQQML I R LMS PRLLL+DE +LGLAP ++ +F ++ Sbjct: 125 FQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPVL 184 Query: 177 RTIRASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 + G+++ LVEQ A +AL V R YV+ENG+V +S ++L+ ++ V +AYLG Sbjct: 185 VDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 148 bits (374), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 133/234 (56%), Gaps = 8/234 (3%) Query: 7 VHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFEGQDIT 66 + YGA + + V+L VE GE++ L+G NGAGKTT + G + +GR+ +G DI+ Sbjct: 10 LQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDIS 69 Query: 67 RLPTHEIMRRGLAISPEGRRVFPSLTVLENLK-------MGAFFASNEEIEQGIAYVFGL 119 R P H+ + GL+ P+ VF L+V +N++ + S E+IEQ + + Sbjct: 70 RQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLDTLLAD 129 Query: 120 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTI 179 K R Q A ++SGGE++ + I RAL + PR +LLDEP G+ P+ + +I I+R + Sbjct: 130 LQIEKLRENQ-ALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVRFL 188 Query: 180 RASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLGH 233 + G+ V + + N + LG+ DR Y++ G V+ S +++A+ VR+ YLG Sbjct: 189 KERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLGE 242 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 115 bits (287), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 16/249 (6%) Query: 2 LQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFE 61 LQ + +G + A VS ++ G + ++IG NGAGK+T + + G R +SG + F Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 62 GQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGA-------FFAS--------- 105 GQ T +H++ R GLA + + +F +T LEN+ +GA FA+ Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 106 NEEIEQGIAYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLA 165 +E A + L + A ++A + G Q+ L I RAL P+LLLLDEP GL Sbjct: 468 DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLT 527 Query: 166 PLVIAQIFEIIRTIRASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSE 225 I + ++IR + + +TV LVE + + + V+D VL+ G V+ S + A + +N Sbjct: 528 HGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSNPA 587 Query: 226 VRKAYLGHG 234 V +AY G G Sbjct: 588 VIEAYFGTG 596 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 431,091 Number of extensions: 17345 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 46 Length of query: 234 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 155 Effective length of database: 740,042 Effective search space: 114706510 Effective search space used: 114706510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)