BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1539.p (258 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 227 4e-61 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 224 4e-60 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 160 4e-41 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 155 1e-39 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 140 9e-35 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 227 bits (579), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 162/251 (64%), Gaps = 1/251 (0%) Query: 6 KTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEI 65 + +L ++ +S RFGGL A+ V++ + + +++ +IGPNGAGKTT FN I+G YQ SG Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 66 TLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPS 125 L G + + H VA+ G+ RTFQNIRLF MT +EN++V +H + + L + + Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKA 127 Query: 126 YRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 R+ E R L+ +G+ A R A LSYG QRR+EIAR + T P+LL LDEPAA Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 G+N EK L +L+ +++ E G +LLIEHD+ L+MG+ DRI V+++GKPI G P V+ Sbjct: 188 GMNATEKLGLRELLVKIKAE-GKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQ 246 Query: 246 SDERVIKAYLG 256 + VI+AYLG Sbjct: 247 KNPAVIEAYLG 257 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 224 bits (570), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 117/251 (46%), Positives = 162/251 (64%), Gaps = 3/251 (1%) Query: 7 TMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEIT 66 T L+ ++M FGGL+A D VS ++ V ++IGPNGAGK+T NC+SGFY+PTSG I Sbjct: 346 TCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIE 405 Query: 67 LDG-VSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPS 125 G ++ A+Q SHQ+A+ GL RTFQN LF MT +EN+LV + + L + LL+ PS Sbjct: 406 FMGQIATAKQ-SHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPS 464 Query: 126 YRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 Y E+ LE +GL A +A L +G QRR+EIAR + P+LLLLDEPAA Sbjct: 465 YFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAA 524 Query: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 GL E ++L +LI L H + VLL+EH + +IM +SD + V+++GK I +GT +VR Sbjct: 525 GLTHGEIEDLMKLIRNL-ASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVR 583 Query: 246 SDERVIKAYLG 256 S+ VI+AY G Sbjct: 584 SNPAVIEAYFG 594 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 160 bits (406), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 144/252 (57%), Gaps = 13/252 (5%) Query: 7 TMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEIT 66 + L VS L +G V V+L V+ EV ++GPNGAGKTT F I G +G I Sbjct: 3 SKLIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIE 62 Query: 67 LDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENL-LVAQHQQVNTNLLSGLLKTPS 125 LDGV I+RQP H+ AQ GL Q +F+ ++V +N+ V + Q+VN L Sbjct: 63 LDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKAL-------- 114 Query: 126 YRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 S+++ QR+ L L + L +A +LS G +RRVEIAR + T PR +LLDEP A Sbjct: 115 ---SKEQIEQRLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFA 171 Query: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 G++P E+ +++ R +E G+ VL+ +H++ +GI DR ++ G + +G P+ + Sbjct: 172 GVDPIAVIEIQRIV-RFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDII 230 Query: 246 SDERVIKAYLGE 257 +DE V + YLGE Sbjct: 231 ADESVRRVYLGE 242 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 155 bits (393), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 150/260 (57%), Gaps = 3/260 (1%) Query: 2 SQPVKTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPT 61 S +++ L+MRFGGL A+D ++L + E EV ++GPNG+GKTT FN ++G Y+ + Sbjct: 16 SSTATSLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKAS 75 Query: 62 SGEITLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLL 121 SG I G + Q ++ + G+ RTFQ RL +TV +N+++ +Q + L L Sbjct: 76 SGSIIYQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLF 135 Query: 122 KTPSYRRSEQEALQRVAYWLEQLG--LTSLANREAGTLSYGLQRRVEIARCMITKPRLLL 179 + ++R + +V L L + T S +RR+E+ R ++++PRLLL Sbjct: 136 RRKAFRAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLL 195 Query: 180 LDEPAAGLNPQEKQELSQLIDRLRRE-HGVAVLLIEHDMSLIMGISDRILVMEHGKPIVT 238 LDEP+AG+ E + L I ++R + + V+LIEH+M++I I+DR +V +GK I Sbjct: 196 LDEPSAGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAE 255 Query: 239 GTPEQVRSDERVIKAYLGEE 258 GT ++ +D V AYLGE+ Sbjct: 256 GTYAEITADPNVQTAYLGED 275 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 140 bits (352), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 128/228 (56%), Gaps = 20/228 (8%) Query: 8 MLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEITL 67 +LE+ L+ RFG VD +SL+++ E F ++GP+G GKTT+ I+GF +P +G+I L Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 68 DGVSIARQPSHQVAQQGLVRT-FQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPSY 126 DGV + P +Q +VRT FQN LF MTV N+ + TP Sbjct: 63 DGVDLTGVPP----EQRVVRTVFQNYALFPHMTVAGNIAFPLE----------MANTP-- 106 Query: 127 RRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAG 186 + E Q+V LE + LT A R LS G ++RV IAR ++T+P+LLLLDEP + Sbjct: 107 ---KSEIKQKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSA 163 Query: 187 LNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGK 234 L+ Q ++++ + L++E G+ + + HD + + +S RI VM G Sbjct: 164 LDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGN 211 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 462,881 Number of extensions: 18358 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 47 Length of query: 258 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 178 Effective length of database: 736,747 Effective search space: 131140966 Effective search space used: 131140966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)