BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1536.p (376 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo... 176 2e-45 gi|134096411|ref|YP_001101486.1| putative branched chain amino a... 105 5e-24 gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chai... 97 1e-21 gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [... 59 3e-10 >gi|134093984|ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] Length = 381 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/347 (32%), Positives = 180/347 (51%), Gaps = 8/347 (2%) Query: 28 QADTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAG---GANGNKFEAVLMDDGCEP 84 Q +KI P+TG A G + GA A+E +NA G G KF+ + DD +P Sbjct: 25 QEQVIKIGSVAPITGTDAHMGKDNENGARMAVEDLNAKGTTIGGKKVKFQLLAEDDASDP 84 Query: 85 KQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFI 144 KQA A A K+V G+ VIGH+ SG+TIPAS IY N G+ ++PSAT P+ T+ + K Sbjct: 85 KQATAAAQKLVDAGVVAVIGHLNSGTTIPASRIYANAGIPQVSPSATNPKYTQ-QGFKTA 143 Query: 145 FRTIGRDDQQGPAAARYVIEKIKPKKVAVLHDKQSYGQGVAASVKSALEAAKVPVVLFEG 204 FR + D Q G +Y ++ + K VAV+ D+ +YGQGVA ++AA +V + Sbjct: 144 FRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYGQGVADEFAKGVKAAGGSIVASQY 203 Query: 205 INAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGVGNKDIT 264 N +D+++I+T +K++ D ++FGG G ++RQ ++ G+ A FMG +G+ + Sbjct: 204 TNNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLRQMKQLGINAKFMGGDGICTGSLP 263 Query: 265 AIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDANGPFQM----PAYSAVKIIADA 320 +AG A V A V+ F A+ + G + AY A + +A Sbjct: 264 GLAGTALGDNQVVCAEAGGVPEARRKGVEDFRASYKKRFGVEVVYTAAYAYDATNAVVEA 323 Query: 321 ITGAKSTDPDKVAAYIHANSFKTPIGNVEYDKKGDLKAFKFVVFTWH 367 + A S +P K + +++ G + +D KGD+K ++T+ Sbjct: 324 MKKANSWEPAKYLPELAKSNYPGITGTIAFDAKGDIKDGTLTLYTFR 370 >gi|134096411|ref|YP_001101486.1| putative branched chain amino acid binding protein [Herminiimonas arsenicoxydans] Length = 390 Score = 105 bits (261), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 98/332 (29%), Positives = 145/332 (43%), Gaps = 18/332 (5%) Query: 30 DTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGGANGNKFEAVLMDDGCEPKQAVA 89 D VKIA GPLTG + G + A A+ NA A +E V DD C P V Sbjct: 29 DVVKIAFVGPLTGGTSSIGLGGRNSADLAVRLRNADPKAK-YTYELVSQDDECRPNVGVQ 87 Query: 90 VANKIVS-QGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRTI 148 VA KI + + I + H CS + +Y G+ ++ A P++T K + R Sbjct: 88 VATKIAADKNIIAGVTHFCSAVAMGTVAVYNRFGLPVVVWGAVLPEITYGNNFKEVHRVN 147 Query: 149 GRDDQQGPAAARYVIEKIKPKKVAVLHDKQSYGQGVAASVKSALEAAKVPVVLFEGINAG 208 G Q AA+++ ++ KK A++HD YG+G L+ V+ G+ A Sbjct: 148 GTMINQSEVAAKFMADQ-GYKKFAIIHDTTDYGKGHNKYFSEFLKKNGATVLGTFGVTAD 206 Query: 209 DSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGV-GNKDITAIA 267 D+S +TK++ D VYFGG P I Q + G+KA F G G+ + I + Sbjct: 207 QQDFSTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKLGIKAQFEGTSGIKSDAYIQGVG 266 Query: 268 GPASEGMLVTLP-ADFAADPANAALVKAFAAAKR----DANGPFQMPAYSAVKIIADAIT 322 +EG L L A + P + K +A G F +Y+A +I DA+ Sbjct: 267 EKLAEGSLAFLEGAPWEKIPGGLFFTAQYQKQKYSEPPEAYGTF---SYAAANLIMDAV- 322 Query: 323 GAKSTDPDKVAAYIHANSFK---TPIGNVEYD 351 + PD+ N+ K T IG V +D Sbjct: 323 --EKVGPDRKKVRDVLNNTKNVDTLIGKVTFD 352 >gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chain amino acid transport systems [Herminiimonas arsenicoxydans] Length = 397 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 151/351 (43%), Gaps = 27/351 (7%) Query: 1 MKFASRLTKIALAAATFAGLAASAGLAQADTVK--IAIAGPLTGAVAQYGDMVKAGALTA 58 MK + K+ AA+ LAA A A A K I +G TGA A G V+ GA A Sbjct: 1 MKKSGLSVKVMTIAASLM-LAAGAMSAHAQERKPCIGFSGAFTGAAAFSGLAVEMGAEVA 59 Query: 59 IEQINAAGGANGNKFEAVLMDDGCEP------KQAVAVANKIVSQGIKYVIGHVCSGSTI 112 I++INA GG G K V DD +P + VA+AN ++ ++G SG + Sbjct: 60 IDEINAKGGVLGQKLSLVKYDDAGQPPKGVDNTRRVAMANNCIA-----ILGGYHSGVAL 114 Query: 113 PASDIYENEGVVMITPSATAPQLTEAKP--HKFIFRTIGRDDQQGPAAARYVIEKIKPKK 170 + E G+ I A ++ E + ++FR +D + + KK Sbjct: 115 AQREAVEQIGIPYIGAFAAGTKIIEPDTGVNNWMFRVSAKDRWVAAYLSDVALAHSPGKK 174 Query: 171 VAVLHDKQSYGQGVAASVKSALEAAKVPVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFG 230 VA+ ++ +G G A VK+ALEA V V E N GD D +A + + + G + + Sbjct: 175 VAIFYENTGWGNGAAPDVKAALEARGVKPVAMETFNWGDQDMTAQLMRARDAGAEAIVMF 234 Query: 231 GYHPEMGLIMRQAREQGVKAVFMGPEGVGNKDITAIAGPASEGMLV--TLPADFAADPAN 288 G E I+R + K G+ ++ +AGP + G+ V T D Sbjct: 235 GLDREGNQILRGMDKLNYKPAIASAWGLAG-NLGELAGPLANGVFVFQTFSWMGKQDAKT 293 Query: 289 AALVKAFAAAKRDANGPFQMP-------AYSAVKIIADAITGAKSTDPDKV 332 AA+ A A K P + AY A+ I+A AI A S D KV Sbjct: 294 AAVYDAL-AKKYKLKAPADLKAGSGTANAYDAIHILAKAIEAAGSFDRVKV 343 >gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [Herminiimonas arsenicoxydans] Length = 429 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 10 IALAAATFAGLAASAGLAQADTVKIAIAGPLTGAVAQYGDMVKAGALTAIEQINAAGGAN 69 +A+ A+ F G+ A AQ ++I I P G G+ G +INAAGG Sbjct: 21 VAVGASGFLGVPA---FAQNKPIRIGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIG 77 Query: 70 GNKFEAVLMDDGCEPKQAVAVANKIVSQ-GIKYVIGHVCSGSTIPASDIYENEGVVMITP 128 G K E V+ ++ PK + K+V Q + V G V SG ++ + E+ + I Sbjct: 78 GRKVELVIQEE-TSPKDTIDRFRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTIFW 136 Query: 129 SATAP---QLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKIKP--KKVAVLHDKQSYGQG 183 T + T KP K++FR+ ++ + A+ I+ K K++A ++ SYG+ Sbjct: 137 DGTTQDGVKETMPKP-KYVFRSTD-NECEAVMASLLAIKHFKGKFKRIACVNPDYSYGRN 194 Query: 184 VAASVKSALEAAKV--PVVLFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMR 241 + ++ L+ + VV + G+ D ++ V LK+ D ++ ++ + M+ Sbjct: 195 TWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFADLPVFMK 254 Query: 242 QAREQGV 248 QA G+ Sbjct: 255 QAHNAGL 261 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 610,165 Number of extensions: 23269 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 4 Length of query: 376 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 293 Effective length of database: 726,862 Effective search space: 212970566 Effective search space used: 212970566 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)