BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1534.p
         (288 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093370|ref|YP_001098445.1| hypothetical protein HEAR0080 [...   190   8e-50

>gi|134093370|ref|YP_001098445.1| hypothetical protein HEAR0080
           [Herminiimonas arsenicoxydans]
          Length = 291

 Score =  190 bits (482), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 109/252 (43%), Positives = 147/252 (58%), Gaps = 19/252 (7%)

Query: 20  CPAWCISILLAALPAAAHAD--------ITPLTPAQCSQLQARKVITAANPVPCTRLSTV 71
           C   C+ ++ AA+  A+HA+        I  + P  C  ++   V+    PV C +L  V
Sbjct: 12  CAGSCL-LMFAAM--ASHAENARPASIAIAEVDPGMCQAMRDAGVLHKNAPVSCAQLRVV 68

Query: 72  SFDYTDFDGATRQ-GSVVVLDAVAPQVESLFGELLLRSFPLASARGLEQFDGDDQRSMQA 130
            F Y   DG     G+V+V+ A+A  V+++F  L  R F LA A+ ++ + GDD  +M+A
Sbjct: 69  HFSYLGLDGKVHDDGAVMVMAALAEHVQAIFATLQQRKFALAGAQLMQHYRGDDLAAMRA 128

Query: 131 NNSSAFNGRPMTGGGGWSKHAYGAAIDINPQQNPYVSQAGSPTQQVLPPQGAAYLQRNPV 190
           NN+SAFN R +T G   S HAYGAAIDINP QNP+V    +     LP  G+ Y  R  V
Sbjct: 129 NNTSAFNDRAVTNGDAPSLHAYGAAIDINPVQNPFVQFEDAGKASYLPAAGSTYANRLAV 188

Query: 191 QP------GMAEDVVGVFYDHGFLVWGGHWKQPIDYQHFEIGSRGFITTLASLPKAQARA 244
           +P      GMAE+VV VF +HGFL+WGG W  PIDYQHF+I SR     LA+LP AQA+ 
Sbjct: 189 RPGKAARKGMAEEVVDVFAEHGFLIWGGDWDAPIDYQHFQI-SRALARRLAALPVAQAKI 247

Query: 245 EFERYVAGYRQC 256
            F+ YV  YR+C
Sbjct: 248 VFDEYVKNYRRC 259


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 485,468
Number of extensions: 20422
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 207
Effective length of database: 733,452
Effective search space: 151824564
Effective search space used: 151824564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)