BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1533.p (311 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 493 e-141 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 349 1e-97 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 91 8e-20 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 78 5e-16 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 66 2e-12 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 493 bits (1268), Expect = e-141, Method: Compositional matrix adjust. Identities = 236/307 (76%), Positives = 265/307 (86%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MNFQQLRSIRE ARCGFNLTEVANVLFTSQPGVSRQIRELEEELGV+IFERNGKRLTGLT Sbjct: 1 MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 +PG+GIL I++RLLLEAENL+RAS+EYAG++ GTL++ATTHTQARY+LP VVQAFR FP Sbjct: 61 DPGRGILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 +VRIALQQS+PEHIAEWV+SGKADIGIATEGLSQF++LVSFPCY W H IVVP+GH LL Sbjct: 121 KVRIALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHAIVVPQGHALLS 180 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 V+LE L +PLITYD+GFTGRGHID+AF+ A I PDIVLTAMDSDVIQQYVSLG+GV Sbjct: 181 HAPVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGV 240 Query: 241 GLVASMAVDQGKHQEMVAIQASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKRADI 300 G+VASMAV + I SHLF N+ RLAVRRGAYLR Y + FIQQFAP+L RADI Sbjct: 241 GIVASMAVQHNGSHGLAVIDGSHLFAQNVTRLAVRRGAYLRQYTYSFIQQFAPELTRADI 300 Query: 301 VNALNEA 307 AL A Sbjct: 301 DRALKPA 307 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 349 bits (896), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 161/297 (54%), Positives = 211/297 (71%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 MN QLR +REA R FNLTE A LFTSQPGVS+ I ELEEELGV+IF R+GKR+ GLT Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 EPG+ +L VE ++LE E L+R E+A SG+ +IATTHTQARY LP+VVQAF FP Sbjct: 61 EPGRAVLKSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 +VR++L Q P+ IAE V+ +AD+ IATE ++ L+S PCY W H IV+P HPLL Sbjct: 121 KVRLSLLQGNPKQIAEMVLMDQADLAIATEAIANMDGLISLPCYQWEHQIVLPLDHPLLK 180 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGV 240 + ++LE+L +P+ITYD F GR ID AF ++PDI+L A+D+DVI+ YV LGMG+ Sbjct: 181 SKSITLEELAAYPIITYDSAFAGRNKIDHAFNLRNLKPDILLEAIDADVIKTYVELGMGI 240 Query: 241 GLVASMAVDQGKHQEMVAIQASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPDLKR 297 G++A MA D + + + AI A HLF N++R+A+++GAYLR Y F FI+ P L R Sbjct: 241 GIIAGMAFDTERDKNLRAIPAGHLFGTNVSRVALKQGAYLRSYVFTFIELLTPTLNR 297 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 90.9 bits (224), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 6/223 (2%) Query: 26 LFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLTEPGKGILGIVERLLLEAENLRRASK 85 L +QP +S+ I+ LE LGV++F R R LT G +L +R+L + L + Sbjct: 27 LHMTQPPLSQAIQSLEAMLGVQLFRRTS-RSVALTPAGSALLPEAQRILQQTAALPDLMR 85 Query: 86 EYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFPQVRIALQQSAPEHIAEWVISGKADI 145 SG LS+A T VLP ++ FR+++P V I L+++ + + ++ G+ D+ Sbjct: 86 RVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGVEIDLREATTDVQLDDLMQGRIDV 145 Query: 146 GIATEGLSQFK--ELVSFPCYTWSHVIVVPKG-HPLLGLEQVSLEDLGTWPLITYDVGFT 202 G+ L +L P + ++ PKG L G + V+L+ L PLI + Sbjct: 146 GLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALKGKQSVALQSLAELPLIIFPRRIA 205 Query: 203 GRGH--IDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGVGLV 243 H I +R AG+ P I A+ I VS GMG+ LV Sbjct: 206 PAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSAGMGIALV 248 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 12/298 (4%) Query: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 M +L+ I AR + A +QP +S I++LE+ELGV +FER G ++ +T Sbjct: 1 MTLTELKYIVAVAR-EKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEIS-MT 58 Query: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFP 120 G I+ ER+L + ++ +K+ G + +T A Y+LP +V+A + P Sbjct: 59 PLGVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVP 118 Query: 121 QVRIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLG 180 Q+ + LQ++ + E + G+ D I + LV P Y V+ VPK HP Sbjct: 119 QMPLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQ-PVYDEPFVVAVPKHHPWAE 177 Query: 181 LEQVSLEDLGTWPLITYDVGFTGRGHIDEA------FRQAGIEPDIVLTAMDSDVIQQYV 234 V+ ++L + ++ G R + E F +G + I+ V Sbjct: 178 RSSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMV 237 Query: 235 SLGMGVGLVASMAVDQGKHQEMVAIQASHLFKANIAR--LAVRRGAYLRGYAFDFIQQ 290 + G+G+ ++ +V H ++ + +R + V R ++ RG A + ++Q Sbjct: 238 ASGIGITVLPQASVPD-MHTTDGMLRYIPFVQPGPSRRVVLVWRKSFTRGVAIEEVRQ 294 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 110/246 (44%), Gaps = 4/246 (1%) Query: 3 FQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLTEP 62 +QL+ AR + + A L +QP VS Q+++LE+ G+ +FE+ GK++ LT Sbjct: 50 LRQLKVFETVARL-LSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIY-LTPG 107 Query: 63 GKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFPQV 122 G +L ++ + + A ++ G G L++A + Y PR++ F + V Sbjct: 108 GTELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFPRLLVEFARSHQGV 166 Query: 123 RIALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLGLE 182 + L E + + + D+ I + + ++ P +VIV H L+ + Sbjct: 167 TLNLSVHNREGLLNQLANNLTDLAIMVRPPTDM-DTINEPFAPHPYVIVAAPDHHLVSKK 225 Query: 183 QVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGVGL 242 + + L P + + G +++ F + +I + ++ I+Q V GMG+ Sbjct: 226 NIPMSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMGISF 285 Query: 243 VASMAV 248 +++ + Sbjct: 286 LSAHTI 291 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 530,457 Number of extensions: 20712 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 11 Length of query: 311 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 229 Effective length of database: 730,157 Effective search space: 167205953 Effective search space used: 167205953 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)