BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1532.p (359 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 610 e-176 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 241 3e-65 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 177 9e-46 gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 156 1e-39 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 154 9e-39 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 610 bits (1572), Expect = e-176, Method: Compositional matrix adjust. Identities = 300/350 (85%), Positives = 320/350 (91%) Query: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 MSIEV +I K+FG+F ALNDVSL FPAGELTALLGPSGCGKTTLLRIIAGLE PD GQVL Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKKL 120 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRV+P + RPSE+VI+EKV KL Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKL 120 Query: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV 240 RLHDELHVTSIFVTHDQEEALEVADQ+VLMNKG VEQIG P+ VYN+PASPFVYGFLGNV Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGNV 240 Query: 241 NLFHGRLHEGVLDAGGARFEAPGHDDIRDAAGVGFVRPHDLDVERYTPGAQGIVVQLRRA 300 NLF GR+HEGVL + G F+AP H +DA G+G+VRPHDL+V+RYT GA+GIVVQLRRA Sbjct: 241 NLFRGRVHEGVLQSSGIAFDAPDHAKTQDARGIGYVRPHDLEVDRYTSGAEGIVVQLRRA 300 Query: 301 HAIGPLAQLELARDDNAELIEAVIPNERFAQLGLKNGETLVVRPRRLQVF 350 HAIGPLAQLEL RDDN ELIEAVI NERF L LK GETLVVRP+RLQVF Sbjct: 301 HAIGPLAQLELERDDNGELIEAVISNERFGLLKLKEGETLVVRPKRLQVF 350 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 241 bits (616), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 120/249 (48%), Positives = 174/249 (69%), Gaps = 8/249 (3%) Query: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 +E+ ++ +RFG T ++++SL+ AGE LLGPSGCGKTTLLR+IAG + PD+G++LLD Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRV--KPRSQRPSEAVIREKVKKL 120 G D + +R V VFQ+YALF HMTV NIAF L + P+S+ I++KV + Sbjct: 64 GVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSE------IKQKVDEA 117 Query: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 LE V+L A RYP +LSGGQRQR+++ARAL P++LLLDEP ALDA++R++++ L Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV 240 L E+ +T ++VTHDQ EAL ++ ++ +MNKG +EQ+ P +Y++P S FV F+G Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTC 237 Query: 241 NLFHGRLHE 249 NLF G + + Sbjct: 238 NLFDGTVTQ 246 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 177 bits (448), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 100/244 (40%), Positives = 144/244 (59%), Gaps = 12/244 (4%) Query: 1 MSIEVHHIQKRFGS--FTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQ 58 +S+E + R G ++ +S G++ LLG SGCGKTT+LR IAG E G Sbjct: 15 LSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGS 74 Query: 59 VLLDGEDASARHV----RERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIR 114 + L G++ S H RQ+G VFQ YALF H++V +N+ FGLR +R + Sbjct: 75 ITLGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPER------Q 128 Query: 115 EKVKKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 ++ LL LV L ++P +LSGGQ+QR+ALARALA +P +LLLDEPF LD +R+ Sbjct: 129 ARIAALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRER 188 Query: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVY 234 L +R + E+ T++ VTHDQ EA +ADQ+ +M G + Q + +Y+ PA+ FV Sbjct: 189 LASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVA 248 Query: 235 GFLG 238 F+G Sbjct: 249 DFIG 252 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 144/240 (60%), Gaps = 9/240 (3%) Query: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 +E+ ++ +G L++++++FP G++ A++G SG GKTT+LR+I G P +G V++D Sbjct: 5 VEIRNLHFAYGERPILSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQAGNVVVD 64 Query: 63 GE-----DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKV 117 G+ D A + R++G +FQH ALF M+VF+N+AF LR + P E +I + V Sbjct: 65 GQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNVAFPLR--EHTDLP-EQLIHDLV 121 Query: 118 KKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 L+ V L A P ++SGG +R+ALARA+A++P++++ DEPF LD Sbjct: 122 LMKLQAVGLRNAAQLKPAEISGGMARRVALARAIALDPQLIMYDEPFAGLDPISMGMTAN 181 Query: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFL 237 +R+L+D L T+I V+HD E+ +AD V ++ G+V GTP + P+V F+ Sbjct: 182 LIRKLNDALGSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMMAS-TDPYVKQFV 240 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 154 bits (388), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 137/232 (59%), Gaps = 18/232 (7%) Query: 1 MSIEVHHIQKRFG----SFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDS 56 M+ ++ HI+ RF +FT D++L P +TAL G SG GKTT LR+IAGLE Sbjct: 1 MNDKLDHIKARFKVNYQAFTLTVDLAL--PGRGITALFGASGSGKTTCLRVIAGLERAAD 58 Query: 57 GQVLLDGE--DASARHV----RERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSE 110 + ++GE A ++ +R +G+VFQ +LF H+ V N+ +G+R +S R Sbjct: 59 VYLEVNGEVWQDDAHNIFLPTHQRPLGYVFQEASLFAHLNVQRNLEYGMRRIAKSAR--- 115 Query: 111 AVIREKVKKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAK 170 + + L+ + L R P +LSGG+RQR+A+ARALA PR+LL+DEP ALDAK Sbjct: 116 ---HVSLDHAVSLLDIGHLLQRKPDKLSGGERQRVAIARALATSPRILLMDEPLAALDAK 172 Query: 171 VRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPE 222 + E+ +L RLHDEL + ++V+H +E +AD +VL+ G+V G + Sbjct: 173 RKAEIMPYLERLHDELDIPVLYVSHSADEVARLADHLVLLETGRVIASGATQ 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 690,302 Number of extensions: 28354 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 49 Length of query: 359 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 276 Effective length of database: 726,862 Effective search space: 200613912 Effective search space used: 200613912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)