BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1530.p (295 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membran... 456 e-130 gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter mem... 244 5e-66 gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membran... 135 2e-33 gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Hermini... 113 1e-26 gi|134096585|ref|YP_001101660.1| molybdenum ABC transporter perm... 95 4e-21 >gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 289 Score = 456 bits (1172), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/291 (78%), Positives = 261/291 (89%), Gaps = 5/291 (1%) Query: 6 VSLAAPRAAPVRAGGTGR--RVLPGFRLSLGFTIFYLALIVLIPLSALFLKTFTLTWAGF 63 +S+A A PV G R RVLPGF LSLGFTIFYL+LIVLIPLSA+FLKTFT++W F Sbjct: 1 MSVAIAAAVPV---GKQRVFRVLPGFHLSLGFTIFYLSLIVLIPLSAVFLKTFTMSWDAF 57 Query: 64 VEAVTSPRVMASYRLSFGASLIAAFLNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALP 123 + AVTS RV+ASY+L+FGASL+AA N IFGGIVAWVLVRY FPGK++IDA+VDLPFALP Sbjct: 58 ITAVTSDRVVASYKLTFGASLLAAVFNAIFGGIVAWVLVRYTFPGKKMIDAMVDLPFALP 117 Query: 124 TAVAGIALTTLYSQNGWLGKLLVPFGIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAE 183 TAVAGIALT LY+ NGW+G+ L GIKVAFTPLGV+VALTFIGLPFVVRT+QPVLE+AE Sbjct: 118 TAVAGIALTALYAPNGWIGRYLEMVGIKVAFTPLGVIVALTFIGLPFVVRTIQPVLEDAE 177 Query: 184 RELEEAAASLGASRWQTFARVIFPTIMPALLTGFALAFARASGEYGSVVFIAGNMPMVSE 243 RELEEAA SLGAS WQTF +VIFPT++PALLTGFALAFARA+GEYGSV+FIAGNMPMVSE Sbjct: 178 RELEEAAVSLGASHWQTFTKVIFPTVLPALLTGFALAFARATGEYGSVIFIAGNMPMVSE 237 Query: 244 ITPLFIVTKLEQYDYAGATAIAMVMLVVSFILLLTINLLQAWTRKRGQSER 294 ITPLFIVTKLEQYDYAGATAIA+VML+ SF++LLTIN+LQAWTRKRGQ+E+ Sbjct: 238 ITPLFIVTKLEQYDYAGATAIAVVMLLASFLMLLTINVLQAWTRKRGQAEK 288 >gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 281 Score = 244 bits (622), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 175/240 (72%) Query: 25 VLPGFRLSLGFTIFYLALIVLIPLSALFLKTFTLTWAGFVEAVTSPRVMASYRLSFGASL 84 +LPGF +S GF++ Y++L++L+P+SAL + +++ + A+T RV+ SY+++ + Sbjct: 13 ILPGFSISFGFSVLYISLVILLPISALLVYVSGMSFDQYWFAITDARVLQSYKVTLMGAF 72 Query: 85 IAAFLNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKL 144 + + G ++AW++ RY FPG+R+ID+LVDLPFALPT+VAG+ L+ L+ GWLG+ Sbjct: 73 YSTVIVTFIGFLLAWIITRYDFPGRRLIDSLVDLPFALPTSVAGVTLSVLFMPTGWLGQW 132 Query: 145 LVPFGIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARV 204 FGIK+++ G++VA+ F LPF+VR+VQPVLE+ E ELEEAA LGA++WQ F RV Sbjct: 133 FDIFGIKISYAFPGIVVAMIFTSLPFIVRSVQPVLEDMENELEEAALMLGANKWQIFWRV 192 Query: 205 IFPTIMPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAI 264 I PT++PAL+TG + AF R+ GE+G+V+ IAGN+P +E+T L + +L++Y+Y A AI Sbjct: 193 ILPTLIPALITGSSQAFIRSLGEFGAVIMIAGNIPFQTEVTSLMLFVRLQEYNYPAAAAI 252 >gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 287 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 117/214 (54%) Query: 46 IPLSALFLKTFTLTWAGFVEAVTSPRVMASYRLSFGASLIAAFLNVIFGGIVAWVLVRYR 105 +PL A+F + W ++ A+ +++ +L+ + IA LN+IFG +W + ++ Sbjct: 35 VPLMAVFAEALKKGWDAYIAAILEEDALSAIKLTLITAAIAVPLNLIFGVAASWCIAKFD 94 Query: 106 FPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPFGIKVAFTPLGVLVALTF 165 F GK + L+DLPF++ ++G+ L+ GW G L+ IK+ F G+++A F Sbjct: 95 FRGKSFLLTLIDLPFSVSPVISGLIYVLLFGAQGWFGGWLIEHNIKILFAVPGIVLATIF 154 Query: 166 IGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPTIMPALLTGFALAFARAS 225 + PFV R + P+++ E EEAA LGAS W+TF V P I LL G L ARA Sbjct: 155 VTFPFVARELIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAM 214 Query: 226 GEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYA 259 GE+G+V ++G++ + PL + +Y ++ Sbjct: 215 GEFGAVSVVSGHIRGQTNTIPLQVEILYNEYQFS 248 >gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Herminiimonas arsenicoxydans] Length = 283 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 33 LGFTIFYLALIVLIPLSALFLKTFTLTWAGFVEAVTSPRVMASYRLSFGASLIAAFL--- 89 +G I L++++PL +F + F+ G VE + + + G +L+AA L Sbjct: 17 IGLGIVLTILMLIVPLILIFTQAFS----GGVELLRQNLSEDYMQHALGLTLLAAVLTVP 72 Query: 90 -NVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPF 148 N++FG ++AW + Y F G+R++ LV++P+A VAG +Y G +G+ L Sbjct: 73 INLVFGILLAWCVTHYDFFGRRLLITLVEIPYATSPVVAGFCYLVVYGLEGVIGQWLYEK 132 Query: 149 GIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPT 208 +++ F G+++ F+ P++ R + P++++ E E AA SLGA+ WQ F V P Sbjct: 133 DVQLMFAWPGIIMVTVFVTAPYIARILMPLMQKQGTEEEIAALSLGATGWQIFRHVTLPN 192 Query: 209 IMPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDY 258 I ALL G + ARA GE+G+V ++G + M +T +V +L DY Sbjct: 193 IKWALLYGAVITNARAVGEFGAVAVVSGTI-MNQTLTLPLLVEQLNN-DY 240 >gi|134096585|ref|YP_001101660.1| molybdenum ABC transporter permease [Herminiimonas arsenicoxydans] Length = 224 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 1/200 (0%) Query: 91 VIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLVPFGI 150 ++ G +AW L R R K + A+V LP LP +V G L +G +GKL GI Sbjct: 25 LVIGTPLAWWLARSRSWIKGPVGAIVALPLVLPPSVLGFYLLVTMGPDGPIGKLTQALGI 84 Query: 151 K-VAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFARVIFPTI 209 + F+ G++V F +PFVV+ +Q E E AA+L AS TF V P Sbjct: 85 SPLPFSFAGLVVGSVFYSMPFVVQPIQNAFEAMGERPLEVAATLRASPLDTFFSVTLPLA 144 Query: 210 MPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVML 269 P LT + FA GE+G V+ I GN+P + + + I +E +YA A +A M+ Sbjct: 145 KPGYLTAIVMGFAHTVGEFGVVLMIGGNIPKETRLISVQIYDHVEALEYAQAHWLAAGMV 204 Query: 270 VVSFILLLTINLLQAWTRKR 289 V + ++L+ + L R++ Sbjct: 205 VFALLVLVALYTLNPTGRRK 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.328 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 467,142 Number of extensions: 17821 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 12 Length of query: 295 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 214 Effective length of database: 733,452 Effective search space: 156958728 Effective search space used: 156958728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)