BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1529.p
         (193 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096560|ref|YP_001101635.1| hypothetical protein HEAR3413 [...    89   1e-19

>gi|134096560|ref|YP_001101635.1| hypothetical protein HEAR3413
           [Herminiimonas arsenicoxydans]
          Length = 154

 Score = 89.0 bits (219), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 47  RVRQDDWETPDLPRWSARLDEVLARDGRPTVIVAHSFGCLTTVHRTAALQAASGSAHPIV 106
           RV+Q +W+ P    W A LD+ L     P ++VAHS GC   V    A    +  A  +V
Sbjct: 6   RVQQQEWDAPQRRDWVAALDKALLALDGPVLLVAHSLGC-ALVAWWVAQHGHAPHADRLV 64

Query: 107 AALLVAPAD------PVK-FSLSAAVRHRLPYPALVIGSDNDPWMSAERGRHWAEAWGAQ 159
            ALLVAPAD      PV+    +   R RLP+  +V+ S +D W S  + + +A  W AQ
Sbjct: 65  GALLVAPADVEQADFPVEAIGFAPMPRLRLPFKTIVVASADDSWCSLPKAQSFAADWDAQ 124

Query: 160 FRSIGARGHINSESGLGDWTEGQQWLLGL 188
           F S GA GHIN++S LGDW +G+ +L  L
Sbjct: 125 FYSAGACGHINAQSNLGDWPQGRAYLASL 153


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 358,579
Number of extensions: 13251
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 116
Effective length of database: 746,632
Effective search space: 86609312
Effective search space used: 86609312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)