BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1526.p (277 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 154 4e-39 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 154 6e-39 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 139 2e-34 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 138 4e-34 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 130 7e-32 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 154 bits (389), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 137/231 (59%), Gaps = 15/231 (6%) Query: 21 LRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYE 80 L +R +++ F TV+ +I L I GEF ++G SGCGK+TLLR++A D G+++ + Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 81 H-EGAGEPE----IRIMFQDARLLPWKRVQANVALGL-----PRQAAPQAVN-ALRQVGL 129 + G P +R +FQ+ L P V N+A L P+ Q V+ AL V L Sbjct: 64 GVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRL 123 Query: 130 EQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRER 189 A +P LSGGQRQRV++ARALV P+LLLLDEPL ALDA R +MQ + +L +E Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 190 GFTALLVTHDVQEAIALADRVLLIEDGQVA-LDQ--RIALARPRSRGQAQF 237 G T + VTHD EA+AL+ R+ ++ G + LD+ RI + PRSR A F Sbjct: 184 GITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRI-YSYPRSRFVADF 233 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 154 bits (388), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 139/241 (57%), Gaps = 21/241 (8%) Query: 36 LHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIY-EHEGAG-EPEIRIMF 93 L DI+L +A GEF+ ++G SGCGKSTLL L+A L ++GG L+ E AG PE ++F Sbjct: 28 LTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAGPSPERAVVF 87 Query: 94 QDARLLPWKRVQANVALGLPR-------QAAPQAVN--ALRQVGLEQRAGEWPAVLSGGQ 144 Q+ LLPW NV L + R +A +A AL VGL + P +SGG Sbjct: 88 QNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNEISGGM 147 Query: 145 RQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFTALLVTHDVQEAI 204 +QRV +ARAL +P++LL+DEP GALDALTR +Q + + G T ++VTHDV EA+ Sbjct: 148 KQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDEAV 207 Query: 205 ALADRVLLIEDGQVALDQRI---ALARPRSR----GQAQFAALEEAILARVLR---HPGS 254 L+D+++++ +G A I LA PR R AQ++ A+L + HP + Sbjct: 208 LLSDKIVMLTNGPSATIGEILEVKLAHPRERVALAKDAQYSEYRTAVLEFLYHRQSHPAA 267 Query: 255 E 255 + Sbjct: 268 K 268 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 137/244 (56%), Gaps = 18/244 (7%) Query: 21 LRLRAVSKAF-----SGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGG 75 + L+ V+K+F + +VL +++ +A GE VA++G+SG GKSTLLR++A L AA G Sbjct: 7 IELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQG 66 Query: 76 ELIYEHEGAGEP--EIRIMFQDARLLPWKRVQANVALGL------PRQAAPQAVNALRQV 127 Y + P I ++FQ L PW VQ NV LGL P + +A L + Sbjct: 67 TAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLI 126 Query: 128 GLEQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWR 187 GL G P LSGG +QRV +AR LV P +LL+DE ALD LT ++ I +W Sbjct: 127 GLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWE 186 Query: 188 ERGFTA---LLVTHDVQEAIALADRVLLIED--GQVALDQRIALARPRSRGQAQFAALEE 242 E+ L+V+H+++EA+ +ADR+L++ G++ + RI L RPR+ + AL + Sbjct: 187 EKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSVEIRALID 246 Query: 243 AILA 246 + A Sbjct: 247 EVYA 250 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 138 bits (347), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 122/215 (56%), Gaps = 15/215 (6%) Query: 19 VGLRLRAVSKAFSGRTVLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELI 78 + + ++ ++K F L+D+ L+ GE A++G SGCGK+TLLR++A L+ G+++ Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 79 YEHEGAGEPEIR-----IMFQDARLLPWKRVQANVALGL---PRQAAP-------QAVNA 123 + E A +R +FQ L V N+A GL P P + Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKL 120 Query: 124 LRQVGLEQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIE 183 L V L+ A +P LSGGQRQR+ALARAL +P++LLLDEP GALDA R E++ + Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 184 SLWRERGFTALLVTHDVQEAIALADRVLLIEDGQV 218 L E T++ VTHD +EA+ +AD+++L+ G V Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHV 215 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 130 bits (327), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 121/221 (54%), Gaps = 15/221 (6%) Query: 35 VLHDIDLDIAPGEFVAIVGRSGCGKSTLLRLVAQLDAAS------GGELIYEHEGAGEPE 88 ++H + + G+ ++G+SGCGK+T+LR +A + + GG+ I PE Sbjct: 33 IVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPE 92 Query: 89 IR---IMFQDARLLPWKRVQANVALGLPRQAAPQ----AVNALRQVGLEQRAGEWPAVLS 141 R ++FQD L P V NV GL + AAP+ L VGL + ++P LS Sbjct: 93 TRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPERQARIAALLTLVGLASQGKKFPHELS 152 Query: 142 GGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFTALLVTHDVQ 201 GGQ+QRVALARAL P LLLLDEP LD R + + + + +E G TA+LVTHD Sbjct: 153 GGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQH 212 Query: 202 EAIALADRVLLIEDGQVA-LDQRIALA-RPRSRGQAQFAAL 240 EA A+AD++ +++DG + D L RP +R A F L Sbjct: 213 EAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGL 253 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 476,346 Number of extensions: 18247 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 49 Length of query: 277 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 197 Effective length of database: 736,747 Effective search space: 145139159 Effective search space used: 145139159 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)