BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1525.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    86   2e-18
gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra...    78   5e-16

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 85.9 bits (211), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 106/202 (52%), Gaps = 16/202 (7%)

Query: 43  LLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSAS----------GELWHHLAVSSGR 92
            L+LVW  I+A+     +  +P P   LK+A  L A           G  W+ LA S  R
Sbjct: 63  FLVLVWEIISAK-----NSGIPSPAVTLKSAIDLFADPFYSNGPNDQGIGWNILA-SLKR 116

Query: 93  AAAGFAVGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKL 152
            A GF + A +G+ LG + G  ++   + +  + +++ +  LA +P+ +L F   + A +
Sbjct: 117 VAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAI 176

Query: 153 FLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFA 212
           + + +   +P+ +NT  G++ V Q  + +A+   LS W +   ++ P  LP +L G+R A
Sbjct: 177 WSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTGVRLA 236

Query: 213 LGLVWVLLIVAETISAQAGIGY 234
           +G  W++++ AE ++   GIG+
Sbjct: 237 IGTAWLVIVAAEMLTGGVGIGF 258


>gi|134096489|ref|YP_001101564.1| putative transmembranee ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 78.2 bits (191), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 3/185 (1%)

Query: 43  LLLLVWWEIAAQAGWLSSRILPEPFA-VLKAAWQLSASGELWHHLAVSSGRAAAGFAVGA 101
           +LL V WE+ A+   L++ +L   F+ V++A  +   SG L   +  S      G+  G 
Sbjct: 66  VLLAVIWEVYARM--LNNTLLFPTFSSVVEALVEGVISGGLLGKVWFSIKILLMGYGAGL 123

Query: 102 GLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFF 161
            L  +L + + + R     L+T   M   +PA+AL+PL +LWFG+   + +F++   V +
Sbjct: 124 VLAALLTVFAITSRIGRDFLETLTSMFNPLPAIALLPLSLLWFGLGTGSLVFVLIHSVVW 183

Query: 162 PVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFALGLVWVLLI 221
            V LNT  G +SV   L  +  +YGLSG      +++P A PSIL GL+      W  LI
Sbjct: 184 AVALNTHSGFQSVSTTLRMVGHNYGLSGLRYVFQILIPAAFPSILTGLKIGWAFAWRTLI 243

Query: 222 VAETI 226
            AE +
Sbjct: 244 AAELV 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 447,588
Number of extensions: 15975
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)