BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1521.p
         (337 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094063|ref|YP_001099138.1| sulfate ABC transporter peripla...   509   e-146
gi|134095672|ref|YP_001100747.1| thiosulfate ABC transporter per...   263   8e-72

>gi|134094063|ref|YP_001099138.1| sulfate ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 334

 Score =  509 bits (1312), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/338 (74%), Positives = 287/338 (84%), Gaps = 6/338 (1%)

Query: 1   MLKKIIKSIAAALVLAQAAHVAQAADVSLLNVSYDPTRELYADYNKAFAKYWKDKTGDIV 60
           +LKK+I   A A  +A  A    AA+VSLLNVSYDPTRELY D+NKAFAK WK KTGD V
Sbjct: 2   LLKKLI---ATAFTIALIAPAVHAAEVSLLNVSYDPTRELYQDFNKAFAKEWKTKTGDDV 58

Query: 61  TIKASHGGSGKQGRSVIDGIDADVVTLALAYDIDEISEKAKLLPADWQKRLPHNSSPYTS 120
             KASHGGSGKQGR+VIDG++ADVVTLALAYDID I+E+  LL  DWQKRLPHNSSPYTS
Sbjct: 59  KAKASHGGSGKQGRAVIDGLEADVVTLALAYDIDAIAERG-LLNKDWQKRLPHNSSPYTS 117

Query: 121 TIVFLVRKGNPKGIKDWGDLIKPGISVITPNPKTSGGARWNYLAAWAYA-KQKGGSDDAA 179
           TIVFLVRKGNPKGIKDW DL+KPG++VITPNPKTSGGARWN+LAAW YA KQ GGS+  A
Sbjct: 118 TIVFLVRKGNPKGIKDWSDLVKPGVAVITPNPKTSGGARWNHLAAWLYALKQPGGSEATA 177

Query: 180 RDYIAKLFKNVPVLDSGARGATITFVERGIGDVLLAWENEALISLKEWGPDKFDIVAPSI 239
            ++++KL+KNVPVLDSGARG+T TFVERGIGDVLLAWENEA++++KE GPDK +IVAPS+
Sbjct: 178 TEFVSKLYKNVPVLDSGARGSTTTFVERGIGDVLLAWENEAILAIKELGPDKVEIVAPSV 237

Query: 240 SILTEPPVAVVDKVADRRGTRKVAEEYLKYLYTEQGQEIIAKNYYRPIDPKIAAKYASQF 299
           SIL EPPVAVVDKV DRRGTRKVAE YL+YLY+ +GQEI A+NYYRPID K+A KYA QF
Sbjct: 238 SILAEPPVAVVDKVVDRRGTRKVAEAYLQYLYSTEGQEIAAQNYYRPIDEKVAKKYAGQF 297

Query: 300 PKLNLVTIDKDFGGWQKAQKTHFADGGTFDQLYTPNKK 337
           PKL L TI  D GGW KAQK HF+DGG FD++Y P KK
Sbjct: 298 PKLKLYTI-VDVGGWSKAQKEHFSDGGVFDKIYQPGKK 334


>gi|134095672|ref|YP_001100747.1| thiosulfate ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 336

 Score =  263 bits (672), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 196/336 (58%), Gaps = 6/336 (1%)

Query: 1   MLKKIIKSIAAALVLAQAAHVAQAADVSLLNVSYDPTRELYADYNKAFAKYWKDKTGDIV 60
           MLKK++   AAA         AQA D  +LN SYD  RE++A  N  F   WK +TG  +
Sbjct: 1   MLKKVVLLTAAAA--TLLTGAAQAQDKPILNASYDVAREVFAAINPKFQAQWKAQTGQDL 58

Query: 61  TIKASHGGSGKQGRSVIDGIDADVVTLALAYDIDEISEKAKLLPADWQKRLPHNSSPYTS 120
            I  S  G+ +Q + ++ G   D VT     DID ++++  L+  DWQK  P+N+SPY S
Sbjct: 59  KIDQSFAGTSRQAQDILQGKKVDTVTFNQVTDIDILAKRG-LIRKDWQKAFPNNASPYYS 117

Query: 121 TIVFLVRKGNPKGIKDWGDLIKPGISVITPNPKTSGGARWNYLAAWAYAKQK-GGSDDAA 179
           TI FLVRKGNPK IK+W DL++  + VI PNPKTSG AR+ YL AW YA +K  G     
Sbjct: 118 TIAFLVRKGNPKNIKNWDDLVRDDVKVIFPNPKTSGNARYTYLGAWLYANEKFKGDQTKT 177

Query: 180 RDYIAKLFKNVPVLDSGARGATITFVERGIGDVLLAWENEALISLK--EWGPDKFDIVAP 237
           + ++ KL  NV    +G RGAT+ F +   GD LL +E+E +   K  E+    ++IV P
Sbjct: 178 KQFVGKLLHNVVNFPTGGRGATVAFAQNNQGDALLTFESEVINIAKSDEFKSGAYEIVVP 237

Query: 238 SISILTEPPVAVVDKVADRRGTRKVAEEYLKYLYTEQGQEIIAKNYYRPIDPKIAAKYAS 297
            +S+L E PVAVVDKV D +GTRKVA  YL Y Y+ + Q ++    YR   P +A   A 
Sbjct: 238 PVSVLAEFPVAVVDKVVDEKGTRKVATAYLNYEYSREIQLLLTTFNYRVHHPDVAKVVAD 297

Query: 298 QFPKLNLVTIDKDFGGWQKAQKTHFADGGTFDQLYT 333
           ++ K+ L+   K  G W + Q  HFA G T DQL +
Sbjct: 298 RYAKVRLIDPTKVLGSWDQIQAAHFAGGATLDQLLS 333


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 661,618
Number of extensions: 28144
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 255
Effective length of database: 730,157
Effective search space: 186190035
Effective search space used: 186190035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)