BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1520.p
         (261 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...   410   e-116

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/241 (82%), Positives = 219/241 (90%)

Query: 20  MVSLLDALADYPDPVSLKELSAATELHPSTAHRILNDLVVKRFVDRVEPGTYRLGMRLLE 79
           MVSLLDALA YPDPVSLKELS  T LHPSTAHRILNDLV+KRFVDR EPG YRLGMRLLE
Sbjct: 1   MVSLLDALATYPDPVSLKELSRVTGLHPSTAHRILNDLVLKRFVDRSEPGAYRLGMRLLE 60

Query: 80  LGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSGMQVVRAIG 139
           LGNIVKSRLSVREAALD MR LHRKT+QT+NLSVRQ DEI+YIDR+FSERSGMQVVRAIG
Sbjct: 61  LGNIVKSRLSVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAIG 120

Query: 140 GRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLAKLERELSMVRALGYAR 199
           GRAPLHLTSTGKLFLS+D+PK V+AYA RT L GHNKNSITDL +LE ELS+VRA GYAR
Sbjct: 121 GRAPLHLTSTGKLFLSIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYAR 180

Query: 200 DNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQEDWVDDLVSTANQISSALGYRKD 259
           DNEELELGVRCMAAGI DD+GKL+AGLSISAPADRLQE+W++DL+ TA +IS ALGY  +
Sbjct: 181 DNEELELGVRCMAAGIHDDTGKLIAGLSISAPADRLQEEWLEDLMRTAREISVALGYSGN 240

Query: 260 Q 260
           +
Sbjct: 241 E 241


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 458,724
Number of extensions: 17165
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 181
Effective length of database: 736,747
Effective search space: 133351207
Effective search space used: 133351207
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)