BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1519.p (366 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidas... 450 e-128 gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidas... 204 7e-54 gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypepti... 67 1e-12 >gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans] Length = 400 Score = 450 bits (1158), Expect = e-128, Method: Compositional matrix adjust. Identities = 238/390 (61%), Positives = 285/390 (73%), Gaps = 39/390 (10%) Query: 1 MIKSALAIFTSVLFI-HAGLAPA----------------------AAQTVNTTTKKA--- 34 M+KSAL +F S+L I HA +A A + NT KA Sbjct: 1 MLKSALGVFFSLLVIAHAPVAQAKEPATSSAKKTTAAKAAPAAKRKTASKNTAANKAIGK 60 Query: 35 -----------PAKKVAAKHPVHAVSKTAVKGSLNNREKLVRKVSVVRGKRHVSYQRVSV 83 PAK+ AK S+T SLN+ EKLV+KV V GK+ V YQRV+ Sbjct: 61 SSASSKRTSSKPAKRSNAKAASGKASRTR-SASLNSDEKLVKKVVTVNGKKRVIYQRVA- 118 Query: 84 APAVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVIDQASSQVLFEKNSSVALPIASVTK 143 P +P VPPVMTAGD+AGL++T D LAL S+VALVIDQ++S+VLFEKN++V LPIAS+TK Sbjct: 119 QPVIPTVPPVMTAGDIAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITK 178 Query: 144 LMTALVVVEAHLNMEEVLTVTDDDVDREKHSSSRLRVGSTLSRDDMLHIALMSSENRAAS 203 LMT LVVVEA +M E+L VT +D+DREK+SSSRLRVGS LSR +MLHIALMSSENRAAS Sbjct: 179 LMTGLVVVEAQQDMNEMLEVTAEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAAS 238 Query: 204 ALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVDSTGLSSQNVASARDLAKLVVAAYNYPI 263 ALGR+YPGGL AFVA MNAKA+SLGM THYVDSTGLSS NVASARDLAKLVV AYN+PI Sbjct: 239 ALGRHYPGGLRAFVATMNAKAKSLGMRGTHYVDSTGLSSNNVASARDLAKLVVEAYNHPI 298 Query: 264 IRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKEWDIGLQKTGFINEAGHCLVMYTRIEGRP 323 +RQYSTD KY+VEP G A+QY +SNRL +N +W+IG+QKTG+I+EAG CLVM T I+ RP Sbjct: 299 LRQYSTDSKYVVEPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERP 358 Query: 324 IVMVFLDSKGRLSHVGDATRMRKWLVEDQP 353 IVM+FLDSKG+ S +GDA R+RKWL +P Sbjct: 359 IVMIFLDSKGKFSRLGDAARIRKWLETMEP 388 >gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans] Length = 274 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 158/234 (67%) Query: 116 ALVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEAHLNMEEVLTVTDDDVDREKHSS 175 A+VID+A+ ++LFEKNSS +PIAS+TKLMTA++V++A L+M E + +TDDDVD K SS Sbjct: 27 AIVIDEATGKILFEKNSSDIVPIASLTKLMTAMLVLDARLDMHEHIMITDDDVDTLKFSS 86 Query: 176 SRLRVGSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYV 235 SR+ VGS L+R+ +L +ALMSS+NRAA AL R YPGG+ F A KA +L + T+ Sbjct: 87 SRVPVGSMLTRNTLLELALMSSDNRAAHALARTYPGGIEHFRLAARNKAHALSLRRTNIE 146 Query: 236 DSTGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSNRLTSNKE 295 + TGLS N ++A DLA+L +AA YP I + +T +++ A Y+++N+L +K Sbjct: 147 EPTGLSPYNTSTASDLARLAMAAARYPEIERITTSAGDLIDLGSSARHYHNTNKLVGDKN 206 Query: 296 WDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDATRMRKWLV 349 W I L KTG+ EAG C++M R GR +MV L+++ + DA + ++L+ Sbjct: 207 WTISLSKTGYTQEAGRCIIMRVRTAGRDAIMVLLNARASANRTADAVSLHRFLM 260 >gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans] Length = 382 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 29/264 (10%) Query: 117 LVIDQASSQVLFEKNSSVALPIASVTKLMTALVVVEA----HLNMEEVLTVTDDDVDREK 172 L++D S+Q+L + V + AS+TKLMTA V A + + +++TV+ + + Sbjct: 34 LLLDATSNQILASNEADVRIEPASLTKLMTAYVAFSAIQDKRIALNQMITVSTNAWKVDP 93 Query: 173 HSSSRL---RVGSTLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGM 229 SS RV +S +D+L+ ++ S N AA AL G AF A MN +A +GM Sbjct: 94 ESSKMFIEPRV--PVSVNDLLYGLIVQSGNDAAVALAEAVAGTEDAFAALMNREAERMGM 151 Query: 230 MDTHYVDSTGL-SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHAMQYNSSN 288 T + + GL S N ++ARDLA L S P++ S YN Sbjct: 152 KSTRFANPHGLPSPNNYSTARDLAVLAT--------HLVSDHPEFYKIYSTKDFTYNKIK 203 Query: 289 RLTSNK-EW---DIGLQKTGFINEAGHCLV-MYTRIEG---RPIVMVFLDSKGRLSHVGD 340 + N+ W + KTG+ AG+CL+ R G R ++ V + + + + Sbjct: 204 QSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAKRPNGANERRLISVVIGTASDQARAQE 263 Query: 341 ATRMRKWLVEDQPNLTRVKMVRAD 364 + ++ W + N VK+ D Sbjct: 264 SQKLLNWGFQ---NFDAVKLYSKD 284 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.128 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 544,999 Number of extensions: 17929 Number of successful extensions: 67 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 3 Length of query: 366 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 283 Effective length of database: 726,862 Effective search space: 205701946 Effective search space used: 205701946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)