BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1516.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094058|ref|YP_001099133.1| hypothetical protein HEAR0815 [...   404   e-114

>gi|134094058|ref|YP_001099133.1| hypothetical protein HEAR0815
           [Herminiimonas arsenicoxydans]
          Length = 298

 Score =  404 bits (1039), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/298 (75%), Positives = 250/298 (83%)

Query: 2   MQSAAGASRSRQFLMRLVPLLFVLIWSTGFIVAKFGLPYAPPLTFLLLRFTGVLLVLLPL 61
           M S    + S    M LVP  FVLIWSTGFIVAKFGLPYAPPLTFLLLRF GVL+VLLPL
Sbjct: 1   MSSFKNTAASWLATMPLVPFFFVLIWSTGFIVAKFGLPYAPPLTFLLLRFLGVLVVLLPL 60

Query: 62  VLLFRAPWPHGRIRHVALAGVLLQAGYLAGVWCAIKIGMPAGLSALIVGLQPILTAFAAP 121
           VLL RAPWP G +RH+A+AG+L+QAGYLAGVWCAIK+GMPAGLSALIVG+QP+LTAFAAP
Sbjct: 61  VLLLRAPWPLGSMRHIAVAGILVQAGYLAGVWCAIKLGMPAGLSALIVGMQPVLTAFAAP 120

Query: 122 LLGESVRGRQWVGLALGLCGVGLVVANKISLIGLSTASIALCVFALLCITAGTLYQKRYC 181
           L+GE VRGRQW+GL  GLCGV LVVANKI+L GLS  SIALC+ ALL IT GT+YQKRYC
Sbjct: 121 LIGEKVRGRQWIGLVCGLCGVALVVANKITLTGLSWQSIALCMMALLSITIGTMYQKRYC 180

Query: 182 AHFDLRTGTVIQFMASIVVVLPFAVALEGFDWHVSNVHWTPQFIGALLWSVLALSIGAIF 241
            HFDLRTGT+IQF AS VVVLP A+ LE F   +  V WTP FI ALLW++LALSIG+IF
Sbjct: 181 PHFDLRTGTIIQFAASSVVVLPLAIWLEDFSPALQTVQWTPNFIIALLWAILALSIGSIF 240

Query: 242 LLFALIRRSAATSVTSLLYLTPPTTAVMAWLIFGEAFSLIGALGMLLGVIGVAFVVRK 299
           LLF LIR+SAAT VTSLLYLTPPTTA+MAW+ FGE FSLIGA GMLL VIGV FVV+K
Sbjct: 241 LLFTLIRKSAATQVTSLLYLTPPTTALMAWVAFGEVFSLIGAAGMLLAVIGVVFVVKK 298


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 500,477
Number of extensions: 18306
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)