BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1515.p
         (303 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094107|ref|YP_001099182.1| putative histone deacetylase [H...    72   4e-14
gi|134095790|ref|YP_001100865.1| putative histone deacetylase/Ac...    63   2e-11

>gi|134094107|ref|YP_001099182.1| putative histone deacetylase
           [Herminiimonas arsenicoxydans]
          Length = 434

 Score = 71.6 bits (174), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 28/237 (11%)

Query: 58  DYIARVSQGLLSPAEQREIGF--PWTSQMVERSRRSA-GATIAACRAAFEQGV----AVN 110
           D I     G+ +  + + + F  P   ++V  S   A G  I A      + V    A+ 
Sbjct: 44  DNIKEFKPGVATAEDIQRVHFCVPGIDEIVHASHLIAVGGCITAADKVMTKEVDNAFALV 103

Query: 111 LAGGTHHAYADHGA-GFCVFNDAAIAARLMQAERRAARVAIVDLDVHQGNGSAAILARDD 169
              G H     HG+ GFC  N  AI    ++ +    ++AI+D D H G+GS  I   D 
Sbjct: 104 RPCGHHSFRVVHGSRGFCTLNMEAIMVEYIRHKYGVKKIAIIDTDCHHGDGSQDIFWHDP 163

Query: 170 SVFTLSLH--GQNNYP---FDKE-------QSDLDLALPDGVGDDDYLHALRGALQQLQQ 217
           +   +S+H  G+  YP   F  E        + ++L +P    ++ +L+ L   +  +  
Sbjct: 164 NTLFISMHQDGRTLYPGSGFADELGGPNAFGTTINLPMPPDTCEEGFLYVLDEIVMPILD 223

Query: 218 RFAPQLLIYLAGADPHEGDRLGKMKLTLAGLAARDETVFNYAHEHKIPVAVTMAGGY 274
            F P L+I  AG D H  D +  MK T  G A  ++ +         P    + GGY
Sbjct: 224 EFKPDLIINSAGQDNHYSDPITNMKFTAHGYAVLNQRL--------APDLAVLEGGY 272


>gi|134095790|ref|YP_001100865.1| putative histone
           deacetylase/AcuC/AphA family protein [Herminiimonas
           arsenicoxydans]
          Length = 310

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 25/228 (10%)

Query: 79  PWTSQMVERSRRSAGATIAACRAAFEQGVAVNLAGGTHHAYADHGAGFCVFNDAAIAARL 138
           P + + V R   +A A + A      + V        HHA  +   GFC++N AAIAA  
Sbjct: 88  PGSLEAVMRCVGAACAGVDAVMGKEVRNVFCATRPCGHHAEPNKAMGFCIYNQAAIAAAY 147

Query: 139 MQAERRAARVAIVDLDVHQGNGSAAILARDDSVFTLSLHGQNNYPFDKEQSD-------L 191
                +  RVA+VD DVH GNG+ A       +F  S H  + YP    +++       +
Sbjct: 148 AYDVHKLERVAVVDFDVHHGNGTQAAFYDRPELFYASSHQSHFYPGTGLEAETGISHNIV 207

Query: 192 DLALPDGVGDDDYLHALRGALQQLQQRFAPQLLIYLAGADPHEGDRLGKMKLTLAGLAAR 251
           ++ LP G     +   +   +    + F P++LI  AG D H  D        LAGL  +
Sbjct: 208 NVPLPRGCDSAMFREQIAAKMLPAIRAFNPEILIISAGFDAHHLD-------PLAGLNLQ 260

Query: 252 DETVFNYAHEHKIPVA---------VTMAGGYGRD-IEQTVAVHLQTI 289
           D+  F++     + +A           + GGY  + +  + A+H++ +
Sbjct: 261 DDD-FDWVTRELMKIADDCCEGRVVSILEGGYSLEGLASSTAIHVKAL 307


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 605,654
Number of extensions: 24851
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 222
Effective length of database: 733,452
Effective search space: 162826344
Effective search space used: 162826344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)