BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1514.p
         (187 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094057|ref|YP_001099132.1| granule-associated protein phas...   201   2e-53

>gi|134094057|ref|YP_001099132.1| granule-associated protein phasin
           [Herminiimonas arsenicoxydans]
          Length = 189

 Score =  201 bits (510), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 127/167 (76%)

Query: 1   MTTYTEQFSAAAKANAEAQLALFSQLAAKTFEGVEKLVDLNLKAAKSSLEESQAAAQKLF 60
           M    EQFS A K   EAQLA+ +  A+  F+ V+K+VDLNL   KSSL+ES AAAQ+L 
Sbjct: 1   MFAIPEQFSTATKNQFEAQLAILNSFASTAFDSVQKIVDLNLNVVKSSLQESSAAAQQLI 60

Query: 61  AAKDPQEFFTLTSSHAQPTLEKSVAYGRHLSGIFSSTQAELTKAAEAQIAEVNRKVVAMI 120
           +AKDPQEFF+L+++ AQPT EK++AY RHL GI +STQAE  KAAE QIAE NRKV++++
Sbjct: 61  SAKDPQEFFSLSAAQAQPTAEKALAYSRHLVGITTSTQAEFAKAAETQIAETNRKVLSLV 120

Query: 121 DEAAKNAPAGSEQAISILKSTIGNLSAGYEQFTKNAKQAAEVLEANV 167
           +E +KNAPAGSE AI+++KS IGN +AGYEQ +K  K A E LE N+
Sbjct: 121 EELSKNAPAGSENAIALIKSAIGNANAGYEQLSKTTKHAVETLEGNL 167


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.306    0.117    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 240,963
Number of extensions: 7235
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 111
Effective length of database: 749,927
Effective search space: 83241897
Effective search space used: 83241897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)