BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1513.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094054|ref|YP_001099129.1| hypothetical protein HEAR0810 [...   391   e-110

>gi|134094054|ref|YP_001099129.1| hypothetical protein HEAR0810
           [Herminiimonas arsenicoxydans]
          Length = 266

 Score =  391 bits (1005), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/265 (72%), Positives = 218/265 (82%), Gaps = 1/265 (0%)

Query: 1   MAFGLIIIGDEILSGRRIDKHFPKVLELLSQRGLQLSWAEYIGDERERITATLKRTLASG 60
           M FGLIIIGDEILSG+R+DKHFPKVLELL  RGL L W E +GD+R RITATLKRT AS 
Sbjct: 1   MGFGLIIIGDEILSGKRVDKHFPKVLELLGARGLALEWVEILGDDRARITATLKRTFASD 60

Query: 61  DVVFCTGGIGATPDDHTRQCAAAALGVPLALHPEAKEKIQERIADMAREAGATPDFETAD 120
           D+VF  GGIGATPDDHTRQCAAAAL VP+ LHPEAK+KIQER+ DMAREA    D    +
Sbjct: 61  DIVFSCGGIGATPDDHTRQCAAAALDVPVVLHPEAKQKIQERMQDMAREANVPFDLNRPE 120

Query: 121 NLHRLKMGEFPQGASIIPNPYNKIPGFWVRNTSGEGAHYFAPGFPVMAWPMFEWVLETHY 180
           NLHRLKMGEFPQGA IIPNPYNKIPGF +R+ +G GAHYF PGFPVMAWPM EW+L+T Y
Sbjct: 121 NLHRLKMGEFPQGADIIPNPYNKIPGFAIRHGNG-GAHYFMPGFPVMAWPMMEWILDTQY 179

Query: 181 ADQFHRQAWAERSLLVFEAMESTLTPLMEAIEAQFPLVKVFSLPHVGDAQTRRHIDLGVK 240
           A  FH+QA  E+S+LVF++MES LTPLME+IE ++P VKVFSLP VGDA+TRRHI+LGVK
Sbjct: 180 AHLFHQQAKVEKSVLVFQSMESALTPLMESIEDEYPQVKVFSLPSVGDAETRRHIELGVK 239

Query: 241 GDPAQVEAAFARMQEGLRTLRAEYQ 265
           G+P Q  AAFAR+  GL  L+ E Q
Sbjct: 240 GEPGQAAAAFARLIAGLDLLQVEVQ 264


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 561,039
Number of extensions: 24116
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)