BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1506.p (326 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 512 e-147 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 177 7e-46 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 102 2e-23 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 98 6e-22 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 88 5e-19 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 512 bits (1319), Expect = e-147, Method: Compositional matrix adjust. Identities = 235/323 (72%), Positives = 280/323 (86%) Query: 1 MKPKIFVARAVFPEVLARLEQHFEVESNQDDRIYTADELQAKTQGKEGLFTTPSEPVTAA 60 MK KI VARA FP+V+ RL+Q FEVESNQ+DRI++ EL K QGK+G+ T SE ++ Sbjct: 1 MKQKILVARATFPDVIERLQQQFEVESNQEDRIFSPAELHEKMQGKDGVIITSSEKLSGE 60 Query: 61 LLTANPQLKAVCNMAVGYNNIDLAAATQAGVMATNTPDVLNETTADFGWALMMAAARRIT 120 ++TANPQLKA+CN+AVGYNNID+AAAT+AG+M TNTPDVLNETTAD+ W L+MA ARR + Sbjct: 61 VITANPQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDVLNETTADYAWTLLMANARRTS 120 Query: 121 ESEHFLRAGQWKKWSYDSFVGPDIHGATLGIIGMGRIGQAIARRSLGFDMQVLYHNRSRL 180 ESEH+LRAG+WK W +D F+G D+HGATLGI+GMGRIGQAIARRS+GFDMQV+YHNRSRL Sbjct: 121 ESEHYLRAGKWKNWRFDQFLGADVHGATLGILGMGRIGQAIARRSMGFDMQVIYHNRSRL 180 Query: 181 APELEARANHARYVSKEELLRQADHVVLVLPYSKETHHTIAAAELALMKPTATLTNIARG 240 P+ EA AN+ARYVSKEELLR ADH++LVLPYS++THH I AAELALMKPTATL NIARG Sbjct: 181 TPDQEAHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALMKPTATLVNIARG 240 Query: 241 GIVDDAALIVALREGRIAAAGVDVFENEPAFKPEFLALSNVVLTPHIASASTPTRLAMAN 300 GIVDD ALI ALRE RIA+AG+DV+ENEPA P+FL LSNVVLTPHI SAS TR AM++ Sbjct: 241 GIVDDVALIAALREHRIASAGLDVYENEPALHPDFLTLSNVVLTPHIGSASEKTRRAMSD 300 Query: 301 CAADNLIAALSGRRPPNLLNPDV 323 CA+ N++AALSG+RPPNLLNP+V Sbjct: 301 CASLNMVAALSGQRPPNLLNPEV 323 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 177 bits (448), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 112/329 (34%), Positives = 177/329 (53%), Gaps = 11/329 (3%) Query: 1 MKPKIFVARAVFPEVLARLEQHFEVESNQDDRIYTADELQAKTQGKEGLFTTPSEPVTAA 60 MKPKI + V PE++ L EV +N +EL +++ + + + V + Sbjct: 1 MKPKIVITHWVHPEIVEMLSSVAEVVTNDTLETLPREELLRRSKDADAVMAFMPDSVDDS 60 Query: 61 LLTANPQLKAVCNMAVGYNNIDLAAATQAGVMATNTPDVLNETTADFGWALMMAAARRIT 120 L A P+LK V GY+N D+ A T+ GV PD+L TA+ L++ R + Sbjct: 61 FLAACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVM 120 Query: 121 ESEHFLRAGQWKKWSYDSFVGPDIHGATLGIIGMGRIGQAIARRSLGFDMQVLYHNRSRL 180 + +R+G + W G + G+T+GIIGMGR+G+AIA+R GF+M +Y + L Sbjct: 121 AGDDHVRSGTFHGWR-PKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCDSVPL 179 Query: 181 APELEARANHARYVSKEELLRQADHVVLVLPYSKETHHTIAAAELALMKPTATLTNIARG 240 P ++ +A +AR VS +ELL +D VV +LP + +T H I A ++ M+ + L N +RG Sbjct: 180 NP-VDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSRG 238 Query: 241 GIVDDAALIVALREGRIAAAGVDVFENEPAFKPEF-----LALSN----VVLTPHIASAS 291 +VD+ A++ AL +G +A DVFE E +P+ AL N + TPH+ S Sbjct: 239 SVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSGV 298 Query: 292 TPTRLAMANCAADNLIAALSGRRPPNLLN 320 RL + +A +++ AL+G+RP LN Sbjct: 299 KKVRLEIERYSAHSILQALAGQRPDGALN 327 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 13/250 (5%) Query: 79 NNIDLAAATQAGVMATNTPDVLNETT-ADFGWALMMAAARRITESEHFLRAGQWKKWSYD 137 +IDL+AA + T V + T A+ WAL+MAA R++ + L+ G W+ S Sbjct: 81 GHIDLSAAAARNI--TIVEGVGDPTAPAELTWALIMAAMRKLPQYVGNLKDGLWQIASLS 138 Query: 138 S---FVGPDIHGATLGIIGMGRIGQAIARRSLGFDMQVLYHNR--SRLAPELEARANHAR 192 S +G + G TLGI G GRIG+ +A F M+VL R SR A + + Sbjct: 139 SAHNTLGAVLKGRTLGIWGYGRIGRMVAGYGQAFGMKVLVWGRDASRAAA---VQDGYQA 195 Query: 193 YVSKEELLRQADHVVLVLPYSKETHHTIAAAELALMKPTATLTNIARGGIVDDAALIVAL 252 S+EE AD + L L + T + A++LA MK +A N +R +V AL AL Sbjct: 196 ASSREEFFSTADVLSLHLRLNDATRGIVTASDLAHMKSSALFVNTSRAELVASDALQTAL 255 Query: 253 REGRIAAAGVDVFENEP-AFKPEFLALSNVVLTPHIASASTPTRLAMANCAADNLIAALS 311 +GR A +DVFE+EP A L + NV+ +PH+ + A +N++A + Sbjct: 256 EQGRPGYAALDVFESEPLAPTSSLLRMENVLASPHLGYVEKDSYELYFRSAFENIVAFAN 315 Query: 312 GRRPPNLLNP 321 G P N+L P Sbjct: 316 G-APKNVLLP 324 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 97.8 bits (242), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 126/249 (50%), Gaps = 27/249 (10%) Query: 57 VTAALLTANPQLKAVCNMAVGYNNIDLAAATQAGVMATNTPDVLNETTADFG-------- 108 V ALL A P+L+ V + VG +NID+ A G+ DV T A+ G Sbjct: 62 VDIALLDAAPKLRVVGRLGVGLDNIDVDACKARGI------DVFPATGANAGAVAEYVIG 115 Query: 109 --WALMMAAARRITESEHFLRAGQWKKWSYDSFVGPDIHGATLGIIGMGRIGQAIARRSL 166 AL+ A R E+ AG W + + + G +I G TLG+IG G IGQ AR + Sbjct: 116 TAMALLREAYTRSAETA----AGTWPRTALSN--GREIAGKTLGLIGFGGIGQLTARLAQ 169 Query: 167 GFDMQVLYHNRSRLAPELEARANHARYVSKE--ELLRQADHVVLVLPYSKETHHTIAAAE 224 + V+ H+ LAP+ A A K+ E+L QAD V L +P + T + I A Sbjct: 170 ALGVTVIAHD-PLLAPD-AAIWQQAGVACKQLHEVLEQADIVSLHIPLTTNTRNLIGADA 227 Query: 225 LALMKPTATLTNIARGGIVDDAALIVALREGRIAAAGVDVFENEPAFKPEFLALS-NVVL 283 LA MKP A L N +RG IVD+AAL AL + A +DVF EP LA + V+L Sbjct: 228 LARMKPDAVLINTSRGEIVDEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAPRVIL 287 Query: 284 TPHIASAST 292 TPHIA +T Sbjct: 288 TPHIAGVTT 296 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 17/271 (6%) Query: 54 SEPVTAALLTAN-----PQLKAVCNMAVGYNNIDLAAATQAGVMATNTPDVLNETTADFG 108 S+P A +TA +LK + +G ++ DL AA + + + + A+ Sbjct: 96 SQPFWPAYMTAERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHV 155 Query: 109 WALMMAAARRITESEHFLRAGQWK-----KWSYDSFVGPDIHGATLGIIGMGRIGQAIAR 163 ++++ R S + G W SYD + ++G + GRIG + R Sbjct: 156 LMMILSQVRNYIPSYKQVIDGGWNIADCVSRSYD------LEAMSVGTVAAGRIGLRVLR 209 Query: 164 RSLGFDMQVLYHNRSRLAPELEARANHARYVSKEELLRQADHVVLVLPYSKETHHTIAAA 223 FD+++ Y +R RL +E N + + E L + D V L P ET H I Sbjct: 210 LLHPFDVKLHYMDRHRLPTAVEKELNLTYHSTLESLTKVCDVVTLNCPLHPETEHMINEK 269 Query: 224 ELALMKPTATLTNIARGGIVDDAALIVALREGRIAAAGVDVFENEPAFKPE-FLALSNVV 282 L K A + N ARG + D A++ AL+ G++A DV+ +PA K + + + Sbjct: 270 TLKNFKRGAYIINTARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKNHPWRTMPHHG 329 Query: 283 LTPHIASASTPTRLAMANCAADNLIAALSGR 313 +TPHI+ S + A + L GR Sbjct: 330 MTPHISGTSLTAQTRYAAGTREILECYFEGR 360 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 611,944 Number of extensions: 24495 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 5 Length of query: 326 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 244 Effective length of database: 730,157 Effective search space: 178158308 Effective search space used: 178158308 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)