BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1505.p
         (469 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094048|ref|YP_001099123.1| hypothetical protein HEAR0803 [...   653   0.0  

>gi|134094048|ref|YP_001099123.1| hypothetical protein HEAR0803
           [Herminiimonas arsenicoxydans]
          Length = 468

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/464 (69%), Positives = 377/464 (81%), Gaps = 12/464 (2%)

Query: 8   PALCAFFALLPLPGWSAELDGASLSLAWALPFAGVLLSIAVLPLLAPALWHHHFGKIAAA 67
           PALC           +AEL+G+ LS+ W +PF G+LLSIA+ PLL P  WHHHFGK+ AA
Sbjct: 14  PALCG----------AAELNGSGLSILWGIPFIGLLLSIALCPLLTPGFWHHHFGKLTAA 63

Query: 68  WGLALLLPLVSVYGSHAALAISVHALVAEYLPFIILLSALFTVAGGICVRGNLHGTPALN 127
           W LA LLP    +G+  A+  +VHA VAE+ PF++L+++LF VAGGICVRGNLHGTPALN
Sbjct: 64  WSLAFLLPCAIYFGAATAVHGAVHAFVAEFFPFLMLITSLFVVAGGICVRGNLHGTPALN 123

Query: 128 TGLLALGTLLASVMGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLTPLGD 187
           TGLLA+GT+LAS MGTTGAAMLLIRPLIRAND RKH  H+VVFFIFLVANAGG+LTPLGD
Sbjct: 124 TGLLAIGTVLASFMGTTGAAMLLIRPLIRANDHRKHAAHIVVFFIFLVANAGGALTPLGD 183

Query: 188 PPLFLGFLKGVDFFWTARHLLGPMLFLCIALLSIFYLLDRHFYLNREERR--AFDPTPDS 245
           PPLFLGFLKGVDFFWT RHL  P LFLC  LL IFYLLD H+Y  REE +    DPTPDS
Sbjct: 184 PPLFLGFLKGVDFFWTVRHLFAPTLFLCSVLLIIFYLLDSHYYHKREEIKPPEQDPTPDS 243

Query: 246 SLQLEGKLNFLLLLAVVALVLMSGLWKPGVAIELMGVPLQWQNLLRDGALLVVIVLSLWL 305
           +L+ EGK+NF+LL AVVALVL+SG WKPG+A    G  ++ QNLLRDG L+VVI LSLWL
Sbjct: 244 ALRFEGKINFILLGAVVALVLISGFWKPGIAYSFFGNTVELQNLLRDGLLIVVIFLSLWL 303

Query: 306 TPSSARQGNEFGWGPMLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVKAVSGPDGRPD 365
           TP  AR+GN+F WGP+ EVGKLFA IF+TI PVIAMLRAGE GAFA++V+AV+  +G P 
Sbjct: 304 TPEGARRGNDFSWGPIQEVGKLFAGIFITIIPVIAMLRAGESGAFASIVRAVTDGNGAPI 363

Query: 366 DVMYFWMTGLLSSFLDNAPTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSYIG 425
           + MYFW TG+LSSFLDNAPTYLVFFNTA GDA  LM  +A+TLAAIS GAVFMGANSYIG
Sbjct: 364 NGMYFWATGILSSFLDNAPTYLVFFNTAGGDAATLMTTMAATLAAISCGAVFMGANSYIG 423

Query: 426 NAPNMMVKAIAEERGVRMPSFFGYLAWSAGILVPLFIVMSLLFF 469
           NAPNMMVKAIAEERG+RMPSFF Y+AWS  IL+PLF++M+ +FF
Sbjct: 424 NAPNMMVKAIAEERGIRMPSFFAYMAWSCAILIPLFVLMTFIFF 467


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 757,869
Number of extensions: 27256
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 384
Effective length of database: 720,272
Effective search space: 276584448
Effective search space used: 276584448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)