BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1504.p
         (391 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093309|ref|YP_001098384.1| nicotinate phosphoribosyltransf...   402   e-113

>gi|134093309|ref|YP_001098384.1| nicotinate
           phosphoribosyltransferase [Herminiimonas arsenicoxydans]
          Length = 397

 Score =  402 bits (1034), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/393 (52%), Positives = 260/393 (66%), Gaps = 10/393 (2%)

Query: 2   IITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNE-NIDLTPYVDEIRAEIAALCRLR 60
           I+ +LL+ DLYKFTM Q +LH  P AQ EY F CRN     L+    ++  E+  LC L 
Sbjct: 4   IVNNLLENDLYKFTMWQALLHSHPEAQTEYEFVCRNAPAYPLSELKADVERELDHLCTLA 63

Query: 61  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPD-PAGNGEIEISVKGPWLHTIMF 119
           F++DEL YLRSLRF+KSDFVDFL +F    K+ITV  D PA    + I   GP +H + F
Sbjct: 64  FRDDELLYLRSLRFMKSDFVDFLTVFRFQRKFITVAADGPA----LRIRAIGPQVHVMGF 119

Query: 120 EVPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCK----IADYGTRRRF 175
           E+ VL IVNE+Y R   +   L E R RL++K+ ++ +  + A  K      D+G RRRF
Sbjct: 120 EIFVLCIVNELYLRRFDQQASLTEARRRLQEKIRLLKNFGKEATRKNPFEFFDFGVRRRF 179

Query: 176 SRSWHAEVIDEMKQHMGSHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQT 235
           S +WH EV+  + + +  +F GTSNV  A ++ LTP+GTMAHEYLQA Q+ G RLRD Q 
Sbjct: 180 SAAWHEEVVVTLAREVPQYFTGTSNVHLAKKYGLTPIGTMAHEYLQAYQSFGVRLRDFQK 239

Query: 236 FAFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHY 295
            A E W +EYRGDLGI L+DV GMDAFL D+D+YF KLFDG RHDSGDP EWGE+ + HY
Sbjct: 240 AALEDWVQEYRGDLGIALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPIEWGEKALAHY 299

Query: 296 RDNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMV 355
              R+D  SK LVFSD+LD     +LY  F DR    FG+GTNL+ND G   L +VMK++
Sbjct: 300 ARLRIDAGSKRLVFSDALDLPGAFSLYRHFADRTLTGFGIGTNLSNDTGIPALNIVMKLM 359

Query: 356 RCNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQ 388
            CNGQPVAKLSD+  K +C D  ++ YLRQVF 
Sbjct: 360 ACNGQPVAKLSDSAGKTLCRDETFLAYLRQVFH 392


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 737,838
Number of extensions: 30351
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 307
Effective length of database: 723,567
Effective search space: 222135069
Effective search space used: 222135069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)