BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1503.p
         (414 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [...   110   1e-25
gi|134094329|ref|YP_001099404.1| putative Leu/Ile/Val/Thr-bindin...    56   4e-09

>gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390
           [Herminiimonas arsenicoxydans]
          Length = 429

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 16/341 (4%)

Query: 7   KSSLRFS-LSLLPALLGLVASLALPLPAGAA-EAIRIGEINSQGRQS-TSGQAYRNGLAL 63
           KS+ R S L  + A + + AS  L +PA A  + IRIG I  +G  + T G+    G+  
Sbjct: 6   KSNQRRSVLKAIGAGVAVGASGFLGVPAFAQNKPIRIGIIAPRGGVAGTIGECGLRGVEW 65

Query: 64  ALEQINEAGGINGRPLQLVVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALAVAR 123
              +IN AGGI GR ++LV++E+    D   R  ++LV  E V+ + G + S V+LA+A 
Sbjct: 66  TTARINAAGGIGGRKVELVIQEETSPKDTIDR-FRKLVLQEKVDCVQGIVSSGVSLALAP 124

Query: 124 QAARSKTVLVVGDALS-DAI--TLDKGNRYTFRVRPSTY--MQAAMLAEQAARMPGRRWA 178
            A  S+   +  D  + D +  T+ K  +Y FR   +    + A++LA +  +   +R A
Sbjct: 125 AAEDSRMPTIFWDGTTQDGVKETMPK-PKYVFRSTDNECEAVMASLLAIKHFKGKFKRIA 183

Query: 179 VVAPNYEYGQSAVASFKMLLKQARPDVEFVSDQWPALGKIKADDVVRAIRQSRPDGIFNA 238
            V P+Y YG++   +F+ LLK+   + E VS+QW  +G +     V A++ ++PD IF++
Sbjct: 184 CVNPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSS 243

Query: 239 TFGEDLQKLVQAGHRQQLFNGVRVVSMGAVGTQALDPSQSEAIRDWVSIGYPGEQINTPE 298
               DL   ++  H   L  G R V + A G Q     + E   + +  G+     + P+
Sbjct: 244 LLFADLPVFMKQAHNAGLTEGTRFV-LPAAGWQHT-AMKKEFTPEGIVWGHNTMYFDDPK 301

Query: 299 ----HQRFLDAYMKKFSEPPQLPVVVGYSTMLAIAGGLRKS 335
                + F+  Y  K+ + P       Y +M+    G+ K+
Sbjct: 302 ASATQKEFVKWYADKYKDYPHWEADRAYFSMMVYKAGVEKA 342


>gi|134094329|ref|YP_001099404.1| putative Leu/Ile/Val/Thr-binding
           protein [Herminiimonas arsenicoxydans]
          Length = 373

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 24  VASLALPLPAGAA---EAIRIGE-INSQGRQSTSGQAYRNGLALALEQINEAGGINGRPL 79
           VAS A  + A A    E I IG+ I+     +  G+ Y  G+    + +N AGGI G+ +
Sbjct: 11  VASAAFLISAAAFSADETIVIGQAIDLSSPNAAIGRDYVAGIKTYFDALNAAGGIAGKKI 70

Query: 80  QLVVREDDGDADQAARNAKELVSNEHVEVLTGTMLSDVALAVARQAARSKTVLVVGDALS 139
           + +VR+D      A +   EL+  E V+ L G +   V  AV    A  ++ LV+   L 
Sbjct: 71  RYIVRDDQATPAVAVKVVSELIEREQVDFLLGGVGDKVTQAVLNAPAFKRSNLVLFAPLV 130

Query: 140 DAITLDKGNRYTFRVRPSTYMQ 161
           DA+ L+  NR  F  RP TY+Q
Sbjct: 131 DAVELND-NRALFW-RP-TYLQ 149


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 730,649
Number of extensions: 29556
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 4
Length of query: 414
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 330
Effective length of database: 723,567
Effective search space: 238777110
Effective search space used: 238777110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)