BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1502.p (107 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas ... 209 3e-56 gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas arsen... 131 6e-33 gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas arsen... 131 9e-33 >gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas arsenicoxydans] Length = 107 Score = 209 bits (531), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 100/107 (93%), Positives = 103/107 (96%) Query: 1 MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60 MTHVVTDSCV CRYTDCVDVCPVDCFREGPNFL+IDPDECIDCAVCVAECPVNAIYAEED Sbjct: 1 MTHVVTDSCVLCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60 Query: 61 VPADQQQYIALNAELSRNWPSITKTKAPLPEAEEWKDKTDKLQYLQR 107 VPADQQ YI LN ELSRNWPSITKTKAPLPEAEEWKDKTDKLQ+L+R Sbjct: 61 VPADQQHYIKLNVELSRNWPSITKTKAPLPEAEEWKDKTDKLQFLKR 107 >gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas arsenicoxydans] Length = 109 Score = 131 bits (330), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 2/107 (1%) Query: 1 MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60 M VVT+SC++C+YTDCV VCP+DCF EGPNFLAI+PDECIDC+VCV ECPVNAI + Sbjct: 1 MPFVVTESCIQCKYTDCVAVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGAAE 60 Query: 61 VPADQQQYIALNAELSRN--WPSITKTKAPLPEAEEWKDKTDKLQYL 105 + +QQ ++ LN LSR+ W I + K PLPE +W + DKL L Sbjct: 61 ISPEQQHFVELNRTLSRHPDWKRIRQQKEPLPEHAKWAELKDKLPLL 107 >gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas arsenicoxydans] Length = 116 Score = 131 bits (329), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 61/107 (57%), Positives = 77/107 (71%), Gaps = 2/107 (1%) Query: 1 MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60 MT VVT+ C++C+YTDCV VCP+DCF EGPNFL I+PDECIDC++CVAECPV AI + + Sbjct: 1 MTFVVTEPCIQCKYTDCVTVCPMDCFMEGPNFLVINPDECIDCSMCVAECPVGAIVGDRE 60 Query: 61 VPADQQQYIALNAELSRN--WPSITKTKAPLPEAEEWKDKTDKLQYL 105 + ADQ ++ LN LS + W IT +K LPE E+W T KL L Sbjct: 61 LAADQAHFLELNRSLSAHPDWQRITMSKPALPEHEKWARTTTKLSLL 107 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 193,459 Number of extensions: 6393 Number of successful extensions: 51 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 3 Length of query: 107 Length of database: 1,000,347 Length adjustment: 69 Effective length of query: 38 Effective length of database: 772,992 Effective search space: 29373696 Effective search space used: 29373696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)