BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1501.p
         (357 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093318|ref|YP_001098393.1| alkyl hydroperoxide reductase s...    66   2e-12

>gi|134093318|ref|YP_001098393.1| alkyl hydroperoxide reductase
           subunit F [Herminiimonas arsenicoxydans]
          Length = 531

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 28/226 (12%)

Query: 109 FDVETSTGTKFITKTIFIAAGVGSFQPRTLKVEGIEQFEGSQVFYRVK-DPALFEGKNIV 167
            +++   G     KT+ +A G    + RT+ V G  ++    V Y    D  LF+GK + 
Sbjct: 299 IEIKLKDGGSLKGKTVILATGA---RWRTIDVPGENEYRNKGVAYCPHCDGPLFKGKRVA 355

Query: 168 ICGGGDSALDWALNFVGKAESVILLHRREEFRAAPASVAKMKEL--------CEQYEMQL 219
           + GGG+S ++ A++  G    V L+    E RA      K++ +         +  E+  
Sbjct: 356 VIGGGNSGVEAAIDLAGIVGHVTLIEFGAELRADAVLQRKLRSMPNVTVITSAQTTEITG 415

Query: 220 VIGQVTGTEIKDGKLAEVKVTGADGVTRRLPLDMLLVFFGLSPKLGPIAEW--GLEIERK 277
              +V G   KD K  EVK    +GV          +  GL P      EW  G     +
Sbjct: 416 DGKRVNGLVYKDRKTEEVKTVELEGV---------FIQIGLVPN----TEWLKGTVALSR 462

Query: 278 QLKVMDTEKFETNVPGIFAVGDINTYPGKKKLILSG-FHEAALAAF 322
             ++    + +T+VPG+FA GD+ T P K+ +I  G   +AAL+AF
Sbjct: 463 HGEIEVDARGQTSVPGVFAAGDVTTVPYKQIVIAVGEGSKAALSAF 508


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 655,319
Number of extensions: 26401
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 274
Effective length of database: 726,862
Effective search space: 199160188
Effective search space used: 199160188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)