BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1500.p
         (411 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094046|ref|YP_001099121.1| poly[D(-)-3-hydroxybutyrate] de...   692   0.0  

>gi|134094046|ref|YP_001099121.1| poly[D(-)-3-hydroxybutyrate]
           depolymerase [Herminiimonas arsenicoxydans]
          Length = 411

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/407 (78%), Positives = 358/407 (87%)

Query: 1   MLYQLHELNRAFLNPMMQWAETSAKLFSDPVSPLAHTPFSQRIAAGYELLYRLSKEYEKP 60
           MLYQLHE NR+ LNP+M WAE S++LF+DP SPLA+TP++QRIAAGYELLYRL K+YEKP
Sbjct: 1   MLYQLHEFNRSLLNPLMHWAEASSRLFTDPASPLAYTPYAQRIAAGYELLYRLGKQYEKP 60

Query: 61  QFNIGEVPVEGKPVGISEEVVETKPFCRLIHFKKDLPARQSAALKQPTVLVVAPLSGHHS 120
            FNI  V V GK V I EE  E K FC LIHF+K L A++ AALKQP VL+VAPLSGHHS
Sbjct: 61  NFNIESVLVNGKTVAIVEEETEKKSFCTLIHFRKKLSAKEFAALKQPVVLLVAPLSGHHS 120

Query: 121 TLLRETVRALLQEHDVFITDWTDARMVPVEQGDFHLHDYVYYVQDFIRTLGPDVHVISVC 180
           TLLR+TVR+LLQ+HDV+ITDWTDARMVP+ +G FHLHDYVYY+QDFIR LGPD+HVISVC
Sbjct: 121 TLLRDTVRSLLQDHDVYITDWTDARMVPLAEGPFHLHDYVYYIQDFIRRLGPDLHVISVC 180

Query: 181 QPTVPVLAAISLMASANDPKLPKSMTMMGGPIDARKSPTAVNDLATEKPFSWFENTVIYS 240
           QPTVPVLAAISLMAS  DP+LPK+MTMMGGPIDARKSPT VNDLA EKP +WFEN VIYS
Sbjct: 181 QPTVPVLAAISLMASERDPRLPKTMTMMGGPIDARKSPTQVNDLAVEKPHAWFENQVIYS 240

Query: 241 VPANYPGFGRKVYPGFLQHAGFVAMNPRRHAQSHWDFYMHLRNGDDASAEEHRKFYDEYN 300
           VP +YPGFGRKVYPGFLQHAGF+AMNP RHAQSHWDFYMHLR GD+ SAEEHRKFYDEYN
Sbjct: 241 VPPSYPGFGRKVYPGFLQHAGFIAMNPGRHAQSHWDFYMHLREGDNESAEEHRKFYDEYN 300

Query: 301 AVLDMPAEFYLETIKVVFQDFNLARGTWEIEGNLVRPQDIKSVALFTIEGELDDISGSGQ 360
           AVLDMPAE+YLETIK VFQ+  L  GTWEIEG LVRPQDIKSVALFTIEGE DDISG+GQ
Sbjct: 301 AVLDMPAEYYLETIKTVFQEHRLPLGTWEIEGKLVRPQDIKSVALFTIEGEKDDISGAGQ 360

Query: 361 TQAAQELCSSIPKARKQHFTVPKAGHYGIFSGRRWREIVCPKIGEFI 407
           T AAQ+LCS++P++ KQ FT P+ GHYGIFSGR+WREI+ PKIGEFI
Sbjct: 361 THAAQDLCSALPQSDKQQFTAPQCGHYGIFSGRKWREIIAPKIGEFI 407


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 826,899
Number of extensions: 34738
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 327
Effective length of database: 723,567
Effective search space: 236606409
Effective search space used: 236606409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)