BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1495.p
         (117 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094041|ref|YP_001099116.1| putative cytochrome c [Herminii...   139   3e-35
gi|134096289|ref|YP_001101364.1| cytochrome c4 [Herminiimonas ar...    55   1e-09

>gi|134094041|ref|YP_001099116.1| putative cytochrome c
           [Herminiimonas arsenicoxydans]
          Length = 117

 Score =  139 bits (351), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 87/114 (76%), Gaps = 1/114 (0%)

Query: 5   LIAFALLAATALLA-QAAGAADLANGRAQLEKYNCASCHGKDYNSPTDPGTPKLAGQHAD 63
           ++A A+++ +A+++  AA  + +  G+A + KYNCASCHG D+ +P DPG PKLAGQH D
Sbjct: 4   ILALAVVSLSAVVSFNAAAESKIEAGKAAVAKYNCASCHGADFQTPIDPGYPKLAGQHKD 63

Query: 64  YLKHALTAYRRGDSAMNGRNNAVMSPNAKPLSDRDINDIAAYLHSLPGTLVVRK 117
           YLKHA+ AY+RG+   NGR+NA+M P +K LS +DI +IA YLHSLP TLV+RK
Sbjct: 64  YLKHAMVAYKRGNQVSNGRSNAIMGPLSKQLSGQDIENIATYLHSLPTTLVLRK 117


>gi|134096289|ref|YP_001101364.1| cytochrome c4 [Herminiimonas
           arsenicoxydans]
          Length = 221

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 1   MKNNLIAFALLAATALLAQ------------AAGAADLANGRAQLEKYNCASCHGKDYNS 48
           +K+  +AF  LA+ A  ++            A G A    G A      C +CHG   NS
Sbjct: 9   VKSLFVAFLTLASIAHASEEKKAVKAVKADPAKGEALYNTGDASRNVIACIACHGAAGNS 68

Query: 49  PTDPGTPKLAGQHADYLKHALTAYRRGDSAMNGRNNAVMSPNAKPLSDRDINDIAAYL 106
                 PKL+GQH  Y+   L  ++ G      RNNA+M P AK +++ DI ++ AY+
Sbjct: 69  SIAE-NPKLSGQHGAYIHKQLLDFKSG-----ARNNAIMGPIAKGMTEEDIRNLIAYM 120


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 199,892
Number of extensions: 7426
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 47
Effective length of database: 769,697
Effective search space: 36175759
Effective search space used: 36175759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)