BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1493.p
         (747 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094039|ref|YP_001099114.1| putative site-specific recombin...   813   0.0  

>gi|134094039|ref|YP_001099114.1| putative site-specific
           recombinase; putative membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 715

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/697 (60%), Positives = 511/697 (73%), Gaps = 15/697 (2%)

Query: 1   MKFLFFKMLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRIDPAASWHERANWMIDVAEWL 60
           MK  F ++  VWRR R G    + D      Q+E LMRR DP ASWH RANWMID+A+W+
Sbjct: 1   MKISFLRICAVWRRFRRGALRHHTDHASYLPQIESLMRRADPHASWHARANWMIDLADWV 60

Query: 61  RHRPAVSLLDRQAWHQVRRQRLVIMLDWLDQHRDVRRAVQNALQKTLREANGPELFSTTG 120
           R  P VSL+   AW +V+ QR+  MLDWLD +RDV++ VQ +L+KTLREA GPELFS TG
Sbjct: 61  RREPKVSLMGDGAWRRVKHQRIRFMLDWLDGNRDVKQVVQASLRKTLREATGPELFSATG 120

Query: 121 LPHEPGFFGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAAWLLELDNDLLVRLWKL 180
           LP E  FF ELSER+ +LILPR +   DLS+LFTAMFPD  DA WLLELD+  L RLWKL
Sbjct: 121 LPRESAFFSELSERMVKLILPRPVGQQDLSTLFTAMFPDESDAEWLLELDHKTLSRLWKL 180

Query: 181 MADDGISHMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMESWL 240
             DDGI+H Y QQI+EA+ YL T V++ GISPAFRQRL P+MP+ ATPF++LRRE+E++L
Sbjct: 181 AGDDGIAHGYRQQIDEAMLYLVTMVISVGISPAFRQRLAPRMPLLATPFMSLRRELENYL 240

Query: 241 RAQPGDLGALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDV 300
            +   D   LRSVRML+AVC AQTD+IYAHLDEYGVSV LVY VERMRAHL RI RL+D+
Sbjct: 241 MSSVRDDAGLRSVRMLIAVCQAQTDKIYAHLDEYGVSVGLVYHVERMRAHLIRISRLLDL 300

Query: 301 RSGVPGPLISPAVPGLAAKAGAGAGRMQLLLCDLIAAHHHRDSVRGLMRRSFALLARKMV 360
           RS       +P V G       GA ++Q +L DLI AHH R SVR L+ RSF+LLARKMV
Sbjct: 301 RS-------APHVDG-------GASQVQAVLVDLIIAHHRRSSVRELVNRSFSLLARKMV 346

Query: 361 ERNADHREQAIARDGAGYRKVMRAGLLGGAVIAGTALVKQSLSTLGVVHFVDGALASLNY 420
           ERNA+H E  IARD   YR + RA + GG + A TAL+K  ++ LG+ HF +GA  S+N+
Sbjct: 347 ERNANHGEHYIARDRTEYRAMFRAAMWGGVITAFTALIKLGITGLGLAHFFEGAFLSINF 406

Query: 421 AASFLLIAALGGVLATRQPAVTAPALASRMGDLDT-EGMRELIAESGQLLRSQSAGIFGN 479
           A SFLLIAA+GGVLAT+QPAVTAPALA++MG LDT EG+REL+A    LLRSQ+A +FGN
Sbjct: 407 ALSFLLIAAIGGVLATKQPAVTAPALAAQMGGLDTVEGLRELLARIAALLRSQAAAVFGN 466

Query: 480 LLAVIPVTAALCALGWFALGGKPMSLETARQTLASLSLVGPTPLYAALTGVLLWLASLAA 539
           LLAV PV  AL            MS + A  T+ASLSLVG TPLYAA TG+LLWLASL A
Sbjct: 467 LLAVAPVVVALSLAVVLMFDKPLMSADKAHSTIASLSLVGVTPLYAAFTGLLLWLASLMA 526

Query: 540 GFADNWFALRRVREVVSNHRRLVHGLGPLRAQRCAAWLERNVATIAGSLALALLLGMAPV 599
           GFADNWFALRRV+E +++HRRLVH LG  RA+R A WLERNV++I G++ALA+LLGM PV
Sbjct: 527 GFADNWFALRRVKESIAHHRRLVHALGAHRAERWADWLERNVSSIVGNVALAVLLGMMPV 586

Query: 600 VAAFFSLPLDIRHVTLAAGTLTAAVFSLGWSALLTPAFWLAAGGVAVTAMLSVAVAFAFA 659
           +A FF LPLD+RHVTL+  TLTAAV +LGW     P FWLA  G+    +L+V VAF+ A
Sbjct: 587 MAQFFGLPLDVRHVTLSTATLTAAVSTLGWEVFAMPQFWLACAGIVAIGVLNVGVAFSCA 646

Query: 660 LALALRSRDLPRRARNVAMRAVLRRFIIRPLFFILPL 696
           LALALR+RD+P R R +  RAVLRRF + P  F  P+
Sbjct: 647 LALALRARDVPGRVRRLVFRAVLRRFTLTPYVFFWPV 683


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,240,761
Number of extensions: 46544
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 658
Effective length of database: 707,092
Effective search space: 465266536
Effective search space used: 465266536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)