BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1490.p
         (389 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094037|ref|YP_001099112.1| hypothetical protein HEAR0792 [...   587   e-169

>gi|134094037|ref|YP_001099112.1| hypothetical protein HEAR0792
           [Herminiimonas arsenicoxydans]
          Length = 389

 Score =  587 bits (1512), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/389 (74%), Positives = 343/389 (88%)

Query: 1   MLIDFFYTVKQAGVPASIKEFLTLLEAMEQQVIAPSLEQFYYLARLTLVKDEANFDKFDR 60
           MLIDFF+ +K+A +P SIKEFL LLEA+E++VI PSL+ FYYLARLTLVKDEA+FDKFDR
Sbjct: 1   MLIDFFFMLKEAKIPVSIKEFLLLLEALEKEVIGPSLDDFYYLARLTLVKDEAHFDKFDR 60

Query: 61  AFGAYFKGVETIFEKRPDIPLEWLLKQLQRELTPEQKAAVEKFGYDKLMERLKQLLEEQK 120
           AFG YFKG+   F++   IPL+WLLK+  ++L+  ++A +EKFGYDKL ERLKQLL+EQK
Sbjct: 61  AFGMYFKGIAAAFDENAAIPLDWLLKRATKDLSAAERALIEKFGYDKLAERLKQLLKEQK 120

Query: 121 ERHEGGSKWIGTGGVSPFGHGGYNPEGIRIGGKGGQRSAVKVWEERQYQDYDGQRELGTR 180
           ERHEGGSKWIGTGG SPFG+ G NPEGIRIGG+GG RSAVK+WE R Y+DYD  RE+GTR
Sbjct: 121 ERHEGGSKWIGTGGTSPFGNSGVNPEGIRIGGEGGNRSAVKIWETRTYRDYDTAREIGTR 180

Query: 181 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS 240
           NIKVALRRLR+FAR+G  +ELALD TIRATA+NAGYLDI+MQPER+N IK+LML DVGG+
Sbjct: 181 NIKVALRRLRKFARQGAHDELALDATIRATANNAGYLDIKMQPERRNNIKILMLLDVGGT 240

Query: 241 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFSTWDVLRKYTPDT 300
           MD+HI R EELFSAA++EFKNMEF+YFHNCVYDYLW+NN+R+HAERF+TWDVLRKY PDT
Sbjct: 241 MDEHIQRIEELFSAAKSEFKNMEFYYFHNCVYDYLWRNNQRKHAERFATWDVLRKYAPDT 300

Query: 301 KLIFVGDATMSPYEIVQPGGAVEYNNAEAGADWLQRFTSTFPHFVWLNPEPEGLWQYRQS 360
           KLIFVGDATMSPYEI+Q G A++Y+N EAGA+WLQRFTS FP ++WLNPEPE +W+YRQS
Sbjct: 301 KLIFVGDATMSPYEILQAGAAIDYHNEEAGAEWLQRFTSMFPSYIWLNPEPENIWEYRQS 360

Query: 361 IALIRQLMNGRMYPLTMDGLEGAMRLLSK 389
           IA+IRQ M+ RMYPLT++GLE  MR LSK
Sbjct: 361 IAIIRQQMDNRMYPLTLEGLERGMRTLSK 389


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 779,178
Number of extensions: 31971
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 306
Effective length of database: 726,862
Effective search space: 222419772
Effective search space used: 222419772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)