BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1487.p (140 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096450|ref|YP_001101525.1| copper exporting ATPase transcr... 156 5e-40 gi|134094827|ref|YP_001099902.1| transcriptional regulator CadR ... 74 2e-15 gi|134093780|ref|YP_001098855.1| metal response regulatory prote... 72 1e-14 gi|134094804|ref|YP_001099879.1| MerR family transcriptional reg... 71 2e-14 gi|134094758|ref|YP_001099833.1| putative regulatory protein Mer... 71 3e-14 >gi|134096450|ref|YP_001101525.1| copper exporting ATPase transcriptional repressor [Herminiimonas arsenicoxydans] Length = 139 Score = 156 bits (394), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 72/131 (54%), Positives = 91/131 (69%) Query: 1 MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60 MNIGEAA ASG+SAKMIRHYE L+ R+ AGYR Y +D+H LRF+++AR LGFS+ Sbjct: 1 MNIGEAAKASGISAKMIRHYESIHLVAPGARSGAGYRTYNDKDLHALRFIKRARSLGFSL 60 Query: 61 AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHRPDC 120 Q+ DL+ LW D R S VK +A TH+ +L++RI EL M+ TL+ L Q C GD RPDC Sbjct: 61 DQIRDLLSLWNDTQRASADVKAIALTHVADLEKRIAELSEMRDTLKHLAQTCSGDGRPDC 120 Query: 121 PILDALGAEQD 131 PIL L + D Sbjct: 121 PILQGLAQQDD 131 >gi|134094827|ref|YP_001099902.1| transcriptional regulator CadR [Herminiimonas arsenicoxydans] Length = 151 Score = 74.3 bits (181), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 1 MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60 + IGE A+ +G S + IR+YE+ L+P+ R+ YR+YG+ V L+F+R R L ++ Sbjct: 6 LKIGELAAQTGSSVETIRYYEQQNLLPQPARSAGNYRIYGEAHVKRLQFIRHCRSLDMTL 65 Query: 61 AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHRPD- 119 ++ L+ V L HIG + RI EL+ ++ L+ L C Sbjct: 66 DEIRTLLNFRDTPEENCAGVNTLLDKHIGHVADRIRELKALQVQLQELRSRCLTVQSTQA 125 Query: 120 CPILDALGAEQD 131 C IL L D Sbjct: 126 CGILQGLANADD 137 >gi|134093780|ref|YP_001098855.1| metal response regulatory protein [Herminiimonas arsenicoxydans] Length = 143 Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 1 MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60 M IGE A+ +G + IR+YE++G++ R GYR Y L+F+R R L S+ Sbjct: 1 MKIGELATKTGCDVETIRYYEKSGILAAPARKANGYREYQIHHQERLQFIRHCRSLQMSL 60 Query: 61 AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHRP-D 119 A + L+ L + + + V L HI E+ R+ L ++ L L C G H D Sbjct: 61 ADIRILLDLQSNPAAGCQNVDDLLDLHIVEIQARVKMLLNLEQQLLTLRNQCSGPHSTRD 120 Query: 120 CPILDALGAEQD 131 C IL L D Sbjct: 121 CGILQNLNVPTD 132 >gi|134094804|ref|YP_001099879.1| MerR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 143 Score = 71.2 bits (173), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 1 MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60 M IGE A+ +G + IR+YE++G++ RT GYR Y L+F+R R L + Sbjct: 1 MKIGELATKTGCDVETIRYYEKSGILAVPERTANGYREYQAHHQERLQFIRHCRSLQMGL 60 Query: 61 AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHRP-D 119 A + L+ L + + + V L +HI E+ R+ L ++ L L C G H D Sbjct: 61 ADIRILLDLQSNPAAGCQSVDDLLDSHIVEVQARVKMLLNLEQQLLTLRDQCSGPHSTRD 120 Query: 120 CPILDALGAEQD 131 C IL L D Sbjct: 121 CGILQNLNVPTD 132 >gi|134094758|ref|YP_001099833.1| putative regulatory protein MerR [Herminiimonas arsenicoxydans] Length = 145 Score = 70.9 bits (172), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 1 MNIGEAASASGVSAKMIRHYEETGLIPKAGRTDAGYRVYGQRDVHLLRFVRQARQLGFSM 60 + IGE A + IR+YE+ GL+ R +A YR+YG+ V L +R R L ++ Sbjct: 6 LKIGELAKHAHCQIATIRYYEQEGLLSAPARNEANYRIYGREHVERLSLIRHCRSLDMTL 65 Query: 61 AQVSDLIGLWLDQSRPSRKVKQLAQTHIGELDQRIHELQTMKATLERLVQDCHGDHR-PD 119 ++ L+ +V L HIG + QRI L+ ++ L+ L Q C+ + Sbjct: 66 NEIRTLLRFRDAPEDNCGEVNTLLDAHIGHVAQRIASLKALEKQLKELRQLCNTTRTAKN 125 Query: 120 CPILDALGAEQDCCSPAGT 138 C IL+ L E + A T Sbjct: 126 CGILNDLAVEANTARDAIT 144 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 264,098 Number of extensions: 9599 Number of successful extensions: 35 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 5 Length of query: 140 Length of database: 1,000,347 Length adjustment: 73 Effective length of query: 67 Effective length of database: 759,812 Effective search space: 50907404 Effective search space used: 50907404 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)