BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1486.p
         (300 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094017|ref|YP_001099092.1| putative haloacetate dehalogena...    75   6e-15

>gi|134094017|ref|YP_001099092.1| putative haloacetate dehalogenase
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 74.7 bits (182), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 126/305 (41%), Gaps = 20/305 (6%)

Query: 2   PQTNHLSFVETDKLRIGFETSGPPEAPPVILVHGWPDDVRTWDSLLGPLRAAGYRVIRPY 61
           P ++ L       ++I     G  E PP++L+HG P     W  +  P  AA + ++   
Sbjct: 16  PDSDSLLIDTAAGVQIHVRVFG--EGPPLLLLHGHPQTHAIWHRV-APTLAANFTLVLAD 72

Query: 62  LRGYG-PTRFLSDATPRSGQLSALASDLMAFAEALGLSRYSLIGHDWGARAAYIAASQCP 120
           LRGYG  ++   DA   +     +A D++   +ALG  R++++ HD GAR A+  A   P
Sbjct: 73  LRGYGDSSKPQGDAVHGNYSKRTMALDMLRVMQALGHERFAVLAHDRGARVAHRLAVDHP 132

Query: 121 ERIAHCIALSVGWGTNTPDQTLSLQQSRSYWYHWFF---ATPRGEAQLRNDRRAFAR-FM 176
             ++  + L +       +QT S   +R+YW HWFF   A P  E  +  D  A+ R  M
Sbjct: 133 AAVSRLVTLDIAPTLAMYEQT-SQAFARAYW-HWFFLIQAAPLPERLIEADPAAYIRDVM 190

Query: 177 WNTWSPTWKFADSEFANTAASFDNPDWVEICLHSYRHRWGFVEGDAAYAALEERLRETP- 235
               +    F     A    +   P         YR         A+   + E+      
Sbjct: 191 GRRHAGLAPFDPRALAEYMRAMALPGAAHGLCEDYR-------ASASIDLVHEQADRDAG 243

Query: 236 -RIMVPTLVLHGTEDGANHPASSEDKEHHFGHAYRRVLIPGAGHFPQREKPDEVIEEVLA 294
            ++  P L L G E  A     +  + H      R   +P  GH+   E PD ++ +VL 
Sbjct: 244 HKMSQPLLALWGAEGVAQRCFDTLAEWHRVASDVRGQALP-CGHYIPEEAPDALLAQVLP 302

Query: 295 WLARA 299
           +L  A
Sbjct: 303 FLQAA 307


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 620,616
Number of extensions: 24569
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 219
Effective length of database: 733,452
Effective search space: 160625988
Effective search space used: 160625988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)