BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1485.p (150 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094827|ref|YP_001099902.1| transcriptional regulator CadR ... 208 1e-55 gi|134094758|ref|YP_001099833.1| putative regulatory protein Mer... 184 2e-48 gi|134093780|ref|YP_001098855.1| metal response regulatory prote... 132 1e-32 gi|134094804|ref|YP_001099879.1| MerR family transcriptional reg... 130 2e-32 gi|134096450|ref|YP_001101525.1| copper exporting ATPase transcr... 83 5e-18 >gi|134094827|ref|YP_001099902.1| transcriptional regulator CadR [Herminiimonas arsenicoxydans] Length = 151 Score = 208 bits (529), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 99/150 (66%), Positives = 117/150 (78%), Gaps = 1/150 (0%) Query: 1 MDTLKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLD 60 + LKIGELA Q VETIRYYE++ LLP+P RS NYR+YG HV+RLQFIRHCRSLD Sbjct: 3 LQILKIGELAAQTGSSVETIRYYEQQNLLPQPARSAGNYRIYGEAHVKRLQFIRHCRSLD 62 Query: 61 MTLEEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQP 120 MTL+E+R LL RD PE+NC VN LLDKHIGHVA RI +L+ALQ QLQ+LR++C T Q Sbjct: 63 MTLDEIRTLLNFRDTPEENCAGVNTLLDKHIGHVADRIRELKALQVQLQELRSRCLTVQS 122 Query: 121 ARDCGILQGLASLPDEMKPANLGSHGGGCH 150 + CGILQGLA+ D++ P NLGSH GGCH Sbjct: 123 TQACGILQGLAN-ADDIDPRNLGSHSGGCH 151 >gi|134094758|ref|YP_001099833.1| putative regulatory protein MerR [Herminiimonas arsenicoxydans] Length = 145 Score = 184 bits (466), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 87/139 (62%), Positives = 103/139 (74%) Query: 2 DTLKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDM 61 + LKIGELA A C + TIRYYE+E LL P R+ +NYR+YG HVERL IRHCRSLDM Sbjct: 4 EKLKIGELAKHAHCQIATIRYYEQEGLLSAPARNEANYRIYGREHVERLSLIRHCRSLDM 63 Query: 62 TLEEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQPA 121 TL E+R LLR RDAPE NCGEVN LLD HIGHVAQRIA L+AL+ QL++LR C T + A Sbjct: 64 TLNEIRTLLRFRDAPEDNCGEVNTLLDAHIGHVAQRIASLKALEKQLKELRQLCNTTRTA 123 Query: 122 RDCGILQGLASLPDEMKPA 140 ++CGIL LA + + A Sbjct: 124 KNCGILNDLAVEANTARDA 142 >gi|134093780|ref|YP_001098855.1| metal response regulatory protein [Herminiimonas arsenicoxydans] Length = 143 Score = 132 bits (331), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/147 (48%), Positives = 84/147 (57%), Gaps = 8/147 (5%) Query: 4 LKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDMTL 63 +KIGELA + C VETIRYYEK +L P R + YR Y H ERLQFIRHCRSL M+L Sbjct: 1 MKIGELATKTGCDVETIRYYEKSGILAAPARKANGYREYQIHHQERLQFIRHCRSLQMSL 60 Query: 64 EEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQPARD 123 ++R LL L+ P C V+ LLD HI + R+ L L+ QL LR QC RD Sbjct: 61 ADIRILLDLQSNPAAGCQNVDDLLDLHIVEIQARVKMLLNLEQQLLTLRNQCSGPHSTRD 120 Query: 124 CGILQGLASLPDEMKPANLGSHGGGCH 150 CGILQ L DE HG CH Sbjct: 121 CGILQNLNVPTDE--------HGCVCH 139 >gi|134094804|ref|YP_001099879.1| MerR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 143 Score = 130 bits (328), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/147 (48%), Positives = 84/147 (57%), Gaps = 8/147 (5%) Query: 4 LKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDMTL 63 +KIGELA + C VETIRYYEK +L P R+ + YR Y H ERLQFIRHCRSL M L Sbjct: 1 MKIGELATKTGCDVETIRYYEKSGILAVPERTANGYREYQAHHQERLQFIRHCRSLQMGL 60 Query: 64 EEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETEQPARD 123 ++R LL L+ P C V+ LLD HI V R+ L L+ QL LR QC RD Sbjct: 61 ADIRILLDLQSNPAAGCQSVDDLLDSHIVEVQARVKMLLNLEQQLLTLRDQCSGPHSTRD 120 Query: 124 CGILQGLASLPDEMKPANLGSHGGGCH 150 CGILQ L D+ HG CH Sbjct: 121 CGILQNLNVPTDD--------HGCVCH 139 >gi|134096450|ref|YP_001101525.1| copper exporting ATPase transcriptional repressor [Herminiimonas arsenicoxydans] Length = 139 Score = 83.2 bits (204), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 3/138 (2%) Query: 4 LKIGELAGQADCPVETIRYYEKEALLPEPTRSPSNYRLYGPRHVERLQFIRHCRSLDMTL 63 + IGE A + + IR+YE L+ RS + YR Y + + L+FI+ RSL +L Sbjct: 1 MNIGEAAKASGISAKMIRHYESIHLVAPGARSGAGYRTYNDKDLHALRFIKRARSLGFSL 60 Query: 64 EEVRELLRLRDAPEQNCGEVNALLDKHIGHVAQRIAQLQALQAQLQQLRAQCETE-QPAR 122 +++R+LL L + ++ +V A+ H+ + +RIA+L ++ L+ L C + +P Sbjct: 61 DQIRDLLSLWNDTQRASADVKAIALTHVADLEKRIAELSEMRDTLKHLAQTCSGDGRP-- 118 Query: 123 DCGILQGLASLPDEMKPA 140 DC ILQGLA D+ K A Sbjct: 119 DCPILQGLAQQDDDGKYA 136 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 238,115 Number of extensions: 6644 Number of successful extensions: 28 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 5 Length of query: 150 Length of database: 1,000,347 Length adjustment: 74 Effective length of query: 76 Effective length of database: 756,517 Effective search space: 57495292 Effective search space used: 57495292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)