BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1482.p
         (461 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094795|ref|YP_001099870.1| putative copper resistance-rela...   399   e-112

>gi|134094795|ref|YP_001099870.1| putative copper resistance-related
           protein [Herminiimonas arsenicoxydans]
          Length = 472

 Score =  399 bits (1026), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/449 (48%), Positives = 292/449 (65%), Gaps = 11/449 (2%)

Query: 9   LRAVAVA-ACTLLAGCAQLSPDGGFDQVEQTSRQRLGQAPAWNRTPQQSQASAQRVRQLL 67
           L+ +A+A +  +LAGCA  S DGG   V   +++R G  P      +Q + S +   + L
Sbjct: 11  LKMLAIALSALILAGCATFSSDGGLASVSAITKERTGY-PVQREQAKQDRTSIESTIRQL 69

Query: 68  QADAASPGRLASADDAVQIALINNPELQAEFAGLGVAEADLVQAGRLPNPGFSFKRSHAG 127
            A   +P      D AV IAL+NN  LQA  A LG+AEADLVQAGR+ NPGFSF R   G
Sbjct: 70  TAQPLTP------DTAVHIALLNNKGLQASLADLGIAEADLVQAGRMRNPGFSFGRLRGG 123

Query: 128 DDLKIERSLSLGLMRLITLPAASRIEQRRFEQVRLSLAARVLALAAQTRQAYYKAVAAQQ 187
            +++I+RS+   L  L+T+P  S IE RRFEQ +L  A++ + LAA +R+AY+ AVAAQQ
Sbjct: 124 SEVEIDRSIMFDLAGLLTMPMRSEIEGRRFEQAKLQAASQAIQLAADSRKAYFNAVAAQQ 183

Query: 188 GLRYQQQVADAAEAAHELAAQMARLGNISKLDAAREQFFYGQAQASLQQAQRLAAQDKES 247
              Y +QVA AAEA  ELA QM R+GN S+LD AREQ FY  A A L +A+  A   +E 
Sbjct: 184 TALYMEQVASAAEAGAELAQQMTRVGNWSRLDQAREQVFYANAIAQLARARHNATASREQ 243

Query: 248 LARLLGL---APDFALPAQLPALPRQLDELNDIEQQALQQRLDVQAARTELEGLQASLGL 304
           L R LGL      + LPA+LP +P   ++  +IE QA+ QRLDV  AR + E    +LG 
Sbjct: 244 LTRHLGLWGRDTAYTLPARLPDIPTAPNDALNIESQAMAQRLDVNMARRDAEATAKALGF 303

Query: 305 TRATRWINVLDLGAVRTSESGKPPEIGYEISIEIPLFDWGEARVAKAESIYLQGAHRLAA 364
           T  + +INV D G    S +GKP E GYEIS+E+PLFDWG ARVA+AE+ Y+Q  HR+A 
Sbjct: 304 THVSGFINVFDAGYANKSTTGKPRENGYEISLELPLFDWGGARVARAEATYMQAVHRVAD 363

Query: 365 SVLDARAQARLAWRERQDAYALARRYQDQLLPLRQRIAEENLLRYNGMLISVFALLADAR 424
           + + AR++ R A+   +  + LAR Y  +++PLR++I++E LLRYNGML SVF LL+DAR
Sbjct: 364 TAVKARSEVRQAYSAYRTTHDLARHYSQEIVPLRKKISDEVLLRYNGMLASVFELLSDAR 423

Query: 425 EQATTVNTAIDAQRDFWIAEAGLQQALGG 453
           +Q  +VN AI+AQRDFW+AE  LQ A+ G
Sbjct: 424 DQINSVNAAIEAQRDFWLAETDLQAAVNG 452


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 678,059
Number of extensions: 23742
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 6
Length of query: 461
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 376
Effective length of database: 720,272
Effective search space: 270822272
Effective search space used: 270822272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)