BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1480.p
         (96 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094799|ref|YP_001099874.1| hypothetical protein HEAR1585 [...    72   6e-15
gi|134094770|ref|YP_001099845.1| hypothetical protein HEAR1554 [...    54   2e-09

>gi|134094799|ref|YP_001099874.1| hypothetical protein HEAR1585
           [Herminiimonas arsenicoxydans]
          Length = 113

 Score = 71.6 bits (174), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 28  DGEIRKIDAATGKLTIRHGEIPNLQMPGMTMVFKAAP-EILARARAGEKISFTAERIDGA 86
           +G +RK+D   GK+TIRHGE+ NL M  MTMVF+     +L + +AG+KI+F AE   G 
Sbjct: 44  EGVVRKVDKENGKITIRHGELKNLGMQPMTMVFRIKDVALLEQTKAGDKINFVAENTGGQ 103

Query: 87  LTVTSLE 93
           LTVT LE
Sbjct: 104 LTVTQLE 110


>gi|134094770|ref|YP_001099845.1| hypothetical protein HEAR1554
           [Herminiimonas arsenicoxydans]
          Length = 128

 Score = 53.9 bits (128), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 28  DGEIRKIDAATGKLTIRHGEIPN--LQMPGMTMVFKAAPE-ILARARAGEKISFTAERID 84
           DGE+R ++     +T++HG I +  ++M  MTM F A  + +L+  + G+K+ FT E ID
Sbjct: 57  DGEVRAVNKENKSITLKHGRIKSSTVEMGPMTMQFAAKDKALLSNVKVGDKVKFTVENID 116

Query: 85  GALTVTSL 92
           G  TVT L
Sbjct: 117 GTATVTVL 124


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 163,744
Number of extensions: 5492
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 1,000,347
Length adjustment: 64
Effective length of query: 32
Effective length of database: 789,467
Effective search space: 25262944
Effective search space used: 25262944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)