BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1478.p
         (289 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094227|ref|YP_001099302.1| formyltetrahydrofolate deformyl...   500   e-143
gi|134095649|ref|YP_001100724.1| phosphoribosylglycinamide formy...    95   4e-21

>gi|134094227|ref|YP_001099302.1| formyltetrahydrofolate deformylase
           [Herminiimonas arsenicoxydans]
          Length = 288

 Score =  500 bits (1287), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/287 (81%), Positives = 256/287 (89%)

Query: 3   HPEYILTLSCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFASEDGAMSD 62
           +P+YIL LSCLDQRGIV RVS +LA HGCNI+DSAQFGDAQSKLFFMRVHFA E+  ++D
Sbjct: 2   YPQYILNLSCLDQRGIVQRVSAYLAGHGCNILDSAQFGDAQSKLFFMRVHFAVEEETLTD 61

Query: 63  AALRADFGVLGDSLQMNWQLHDAGKKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIV 122
             LR+ F  L D++QM+WQLHDA KKPR++LMVS IGHCLNDLLFRYKSGLLPV+IPAI+
Sbjct: 62  EVLRSTFATLADTMQMDWQLHDAHKKPRMLLMVSSIGHCLNDLLFRYKSGLLPVDIPAII 121

Query: 123 SNHTDFYQLAASYNIPFHHLPLATGSSAQVKRAQEQRIMEIVEANQIDLVVLARYMQILS 182
           SNHTDFYQLAASYNIPFHHLPLATG+    KR QEQRI+EIV+A  IDL+VLARYMQILS
Sbjct: 122 SNHTDFYQLAASYNIPFHHLPLATGAPESAKRMQEQRILEIVKAADIDLIVLARYMQILS 181

Query: 183 PEMCEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGV 242
           PEMC AL GRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTG LDEGPIIEQ V
Sbjct: 182 PEMCAALEGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGHLDEGPIIEQDV 241

Query: 243 ERVDHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN 289
            RVDH+M P TLTAIGRD+ECVVLARAVK+F EHRILLNGHKTV+F 
Sbjct: 242 ARVDHAMDPATLTAIGRDVECVVLARAVKYFVEHRILLNGHKTVVFK 288


>gi|134095649|ref|YP_001100724.1| phosphoribosylglycinamide
           formyltransferase [Herminiimonas arsenicoxydans]
          Length = 209

 Score = 94.7 bits (234), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 90  RVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDF--YQLAASYNIPFHHLPLATG 147
           R+++++S  G  +  ++   +    P +I A+VSN  D    Q AA + IP   +P    
Sbjct: 3   RIVILISGRGSNMEAIIRAAQDEKWPAKIVAVVSNRADASGLQYAAEHGIPAIVVPHKDY 62

Query: 148 SSAQV-KRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEALRGRAINIHHSFLPSFKG 206
           ++ +    A + RI E       DLVVLA +M++L+        GR +NIH S LPSF G
Sbjct: 63  ATREAFDAALQSRIDEF----SPDLVVLAGFMRVLTSRFVAHYAGRMLNIHPSLLPSFVG 118

Query: 207 AKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVL 266
              + QA   GV + GAT HFVT DLD GPI+ Q    V       TL A   + E ++ 
Sbjct: 119 LATHRQALAAGVTIHGATVHFVTADLDHGPIVAQATVPVLPDDTETTLAARVLEQEHIIY 178

Query: 267 ARAVKWFTEHRILLN 281
            R ++ F E R+ L 
Sbjct: 179 PRVIRAFVEGRVALT 193


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 557,554
Number of extensions: 22465
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 208
Effective length of database: 733,452
Effective search space: 152558016
Effective search space used: 152558016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)