BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1472.p
         (571 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094920|ref|YP_001099995.1| putative transmembrane protein ...   644   0.0  

>gi|134094920|ref|YP_001099995.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 578

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/577 (62%), Positives = 434/577 (75%), Gaps = 8/577 (1%)

Query: 2   KHKRDYTADRRLPLLCAIAVVIGVLSTGAAWLLIKLIALFTNLFYFQRLSFAASSPASHT 61
            H+RD+  DRR+  LC IAVVIG +ST AA++L+ LI  FTNLF+FQ  SFA  SPA+HT
Sbjct: 3   SHQRDFAPDRRIIFLCLIAVVIGAVSTVAAFVLLNLIHFFTNLFFFQTFSFADRSPATHT 62

Query: 62  LG-WIAAVLPVAGGLIVGLMARYGSDKIRGHGIPEAIEAILFGKSRMSPKVALLKPLSSG 120
           LG W+ AV PVAGGLI GL+ARYGSDK+RGHGIPEAIEAILF KS+MSPKVALLKPL+SG
Sbjct: 63  LGLWVIAV-PVAGGLIAGLIARYGSDKVRGHGIPEAIEAILFRKSQMSPKVALLKPLTSG 121

Query: 121 IVIGSGGPFGAEGPIIMTGGSLGSLLAQWLHLTAAERKTLLVSGACAGMTAIFGTPLAAV 180
           IVIGSGGPFGAEGPIIMTGG++GSL+AQ   ++AAERKTLLV+GA AGMTA+FGTP+AAV
Sbjct: 122 IVIGSGGPFGAEGPIIMTGGAIGSLIAQNFSMSAAERKTLLVAGATAGMTAVFGTPVAAV 181

Query: 181 LLAVELLLFELRPRSLLPVALACAVAGFLRPWMIDAGVLFPLQVAPVAPLALLSCLLAGL 240
           LLAVELLLFE RPRSLLPV LACAVA F RP ++++G LFP+  APV   A   C++AGL
Sbjct: 182 LLAVELLLFEWRPRSLLPVILACAVAAFCRPLLLESGPLFPIHTAPVGLAAFAICIVAGL 241

Query: 241 ASGVLAALLTLALYRIEDGFHRLPLHWMWWPALGGIAVGLGGLLQPRALGVGYDVIADLL 300
            SG+L+A+++L+LYR+ED F +LPLHWMWWPA+GG+AVG+G   +PRALGVGYDVIADLL
Sbjct: 242 LSGMLSAVMSLSLYRVEDWFGKLPLHWMWWPAIGGLAVGIGAYFEPRALGVGYDVIADLL 301

Query: 301 NQHMLVSAALVLLMVKAVIWLLALGSGTSGGVLAPLLMMGAGLGLVLSPWLPGGSPTLWP 360
           N  M++SAAL LL+VKA+IW++ALGSGTSGGVLAPLLM+GAGLG V++  +PG  PTLWP
Sbjct: 302 NHRMILSAALSLLLVKAIIWVVALGSGTSGGVLAPLLMLGAGLGAVIASLVPGSDPTLWP 361

Query: 361 LVCMAGVLGSVLGAPLTAIVFAFGLTHAGNALLPLIATTAVAYGVNVLWMKRSIMTEKIA 420
           LVCMA VL  VLGAPLTA +FA GLT   NALLPL+  T V+YG  VL M+RSIMTEKIA
Sbjct: 362 LVCMAAVLAGVLGAPLTAAIFALGLTGDFNALLPLLLATGVSYGFTVLVMRRSIMTEKIA 421

Query: 421 RRGLHVHREYGVDPLERVHVDDLMSVPQA-LEAALPAGQALEQCRTGAQVHRYYP-VTAQ 478
           RRGLH++REY VDP ERV V D+M+   A ++AAL   Q         Q HR +P V AQ
Sbjct: 422 RRGLHIYREYSVDPQERVFVQDVMATDIAHIDAALSLQQVSRDYFGAGQKHRSFPVVNAQ 481

Query: 479 GRLVGMVALRRLRQ----ADPATDCGSLLEPDSGYLLPHLSARAAAGAMAQRAVARLPVV 534
            +L+GM+    L Q     D A   GSL E          + +     MA +   RLPVV
Sbjct: 482 QKLLGMLDRELLMQWMGKHDGARQIGSLFEKIPSVAFATETCQVVGRRMAIQHAERLPVV 541

Query: 535 AGPEKQQLVGVLSLSDLARASATHAEEESVREKLLGN 571
           A      L+G++S SDL + S T   EE +RE+L   
Sbjct: 542 ADRASMSLIGIVSRSDLLKPSHTAFYEEHIRERLFSR 578


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 974,668
Number of extensions: 37719
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 484
Effective length of database: 713,682
Effective search space: 345422088
Effective search space used: 345422088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)