BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1471.p
         (311 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094505|ref|YP_001099580.1| serine acetyltransferase [Hermi...   131   5e-32

>gi|134094505|ref|YP_001099580.1| serine acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  131 bits (329), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 89/152 (58%), Gaps = 8/152 (5%)

Query: 146 DPAASSISEILLCYPGTTAIIYHRLAHALHQLGAPLLARLIADIAHSATGIDIHPAAQIG 205
           DPAA S+ E++ CYPG  AI+  R AH         L R  + IA   TGI+IHP A+IG
Sbjct: 16  DPAARSVWEVITCYPGLHAIVMQRWAHWFWVNDLKWLGRFTSHIARWLTGIEIHPGAKIG 75

Query: 206 PSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIARHPIVEDDVVV 265
              FIDHG GVVIGET  IG +  +YQ VTLG          SL KG  RHP + + V++
Sbjct: 76  RRVFIDHGFGVVIGETAEIGDDCTIYQGVTLGGT--------SLSKGAKRHPTLGNGVII 127

Query: 266 YAGATLLGRITIGQGSVIGGNVWLTHSVPPGS 297
            AGA +LG  T+G+G+ +G N  +   VP G+
Sbjct: 128 GAGAQVLGAFTVGEGAKVGSNAVVVKEVPAGA 159


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 621,749
Number of extensions: 26861
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 229
Effective length of database: 730,157
Effective search space: 167205953
Effective search space used: 167205953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)